| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,215,018 – 21,215,195 |
| Length | 177 |
| Max. P | 0.915345 |
| Location | 21,215,018 – 21,215,195 |
|---|---|
| Length | 177 |
| Sequences | 13 |
| Columns | 195 |
| Reading direction | reverse |
| Mean pairwise identity | 83.22 |
| Shannon entropy | 0.36519 |
| G+C content | 0.44128 |
| Mean single sequence MFE | -54.01 |
| Consensus MFE | -34.62 |
| Energy contribution | -33.58 |
| Covariance contribution | -1.04 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.915345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21215018 177 - 23011544 ---------AAUGGCAGAGGUUAGUUAUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUC-CUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUC-CACUACGGCAAUUUUUGGAAGCCCGAGAGGGC-UAAUUAAAUAAUUAAUAUGA----- ---------..((((((((((.....)))))))).)).(((((((((((((.((...(.....-...)...))))))).))))))))(((((.........((((..-....(((.((((((((........))))-).))).))).....)))).(((((....))))-)..........)))))....----- ( -57.10, z-score = -2.66, R) >droGri2.scaffold_15252 14158103 177 + 17193109 ---------UUUAGCAGUGUUUGGUUAUCUUUGCGCAGAGGCGAUAUCGUAAUCAAUGAAGUU-CUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUC-CACUACGGCAAUUUUUGGAAGCCCGAGAGGGC-UAAUUUCAUAAUAAAUGUGA----- ---------((((((.((((..((....))..))))...((((((((((((.(((.((.....-.)).)))..))))).))))))).))))))........((((..-....(((.((((((((........))))-).))).))).....)))).(((((....))))-)....(((((.....)))))----- ( -54.00, z-score = -2.37, R) >droMoj3.scaffold_6500 18501582 177 + 32352404 ---------CUUAGGCGAGUUAGGUUAUCUUUGCGCAGAGGCGAUAUCGUAACCAAUGAAGUU-CUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUC-CACUACGGCAAUUUUUGGAAGCCCGAGAGGGC-UCAUAAUUUAAUAAAUGAAA----- ---------....((.(.(((.(((((........(((.((((((((((((.((.....((..-...))..))))))).)))))))..))).......)))))))).-).))(((.((((((((........))))-).))).))).....(((..(((((....))))-)..)))..............----- ( -49.86, z-score = -1.42, R) >droVir3.scaffold_12963 3499050 184 - 20206255 GUCAAGCGUUUUCCUGAUCAAAGCACAACCUUGUGCAGUGGCAAUAUCGCAAACAAUGAGGUCACAACCGAGUUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUA-ACUCGCCCUG----UGUGAGCCACGCUCACGUUGAGGCAAUUUUUUUAGGCUCGAAAGAGC-UGAUUCUUAAAUAAAUGCAA----- .....((((((..((((((((.(((((....)))))..((((((((((((((.......(((....)))...)))))).)))))))).))))...............-....((((..----(((((((...)))))))..).))).......))))((((....))))-............))))))..----- ( -57.30, z-score = -3.25, R) >droWil1.scaffold_180708 8764515 177 - 12563649 ---------UUUGGCCAUGCUAUGUUAUCUUUGCGCAGCGGCAAUUUCGUAACCAAUGAAG-G-CAACUGAGGUGCGAAUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCCAGGGGACGUGAAAUACCGUC-CGCUAAGGCAAUUUUUGGAAGCCCGAGAGGGCUUAAAUAUAUAAUAAAUUUGA----- ---------((..((...(((.(((.......))).)))((((((((((((.((.....((-.-...))..)))))))).)))))).))..))........((((..-....(((.((.(((((........))))-).))..))).....))))((((((....))))))...................----- ( -53.60, z-score = -1.88, R) >droPer1.super_10 2319064 177 - 3432795 ---------AUUUCGAGUGUCAGGUUAUCUUUGCGCAGUGGCAAUACCGUAACCGAUGAAGUU-CUACUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUC-CACUACGGCAAUUUUUGCAAGCCCGAGAGGGC-UAAUUAUCCAAUACAUAUGA----- ---------...(((.((((..(((((........((((((((((((((((.((.....((..-...))..))))))).)))))))).))).......)))))....-....(((.((((((((........))))-).))).)))..........(((((....))))-)...........)))).)))----- ( -54.36, z-score = -2.01, R) >dp4.chr4_group4 3297744 177 - 6586962 ---------CUUUCGAGUGUCAGGUUAUCUUUGCGCAGUGGCAAUACCGUAACCGAUGAAGUU-CUACUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUC-CACUACGGCAAUUUUUGCAAGCCCGAGAGGGC-UAAUUAUCCAAUAAAUAUGA----- ---------.((((((((((.(((....))).))))..(((((((((((((.((.....((..-...))..))))))).)))))))).)))))).............-....(((.((((((((........))))-).))).)))..........(((((....))))-)...................----- ( -53.40, z-score = -1.85, R) >droEre2.scaffold_4845 19303585 176 + 22589142 ----------AUGCCAGCGUUUAGUUAUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUC-CUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUC-CACUACGGCAAUUUUUGGAAGCCCGAGAGGGC-UAAUUGAAUAAUAAAUUUAA----- ----------.(((((((((..((....))..))))..)))))...(((((.........(((-(.((...((((.((.(((((...(((((.....))))))))))-.))))))..))))))(((..........-))))))))(((((......(((((....))))-))))))..............----- ( -53.90, z-score = -2.19, R) >droYak2.chr2R 19578622 176 + 21139217 ----------AUGCGAGUGCUUGCUUAUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUC-CUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUC-CACUACGGCAAUUUUUGGAAGCCCGAGAGGGC-UAAUUAAACAAUUUAUUUAA----- ----------......((((............))))..(((((((((((((.((...(.....-...)...))))))).))))))))((((..........((((..-....(((.((((((((........))))-).))).))).....)))).(((((....))))-).......))))........----- ( -52.00, z-score = -1.59, R) >droSec1.super_18 1139215 176 - 1342155 ----------AUGGCAGGGCUUAGUUAUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUC-CUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUC-CACUACGGCAAUUUUUGGAAGCCCGAGAGGGC-UAAUUAAAUAAUUAAUAUGU----- ----------.((((((((.........)))))).)).(((((((((((((.((...(.....-...)...))))))).))))))))(((((.........((((..-....(((.((((((((........))))-).))).))).....)))).(((((....))))-)..........)))))....----- ( -52.30, z-score = -1.00, R) >droSim1.chr2L 20798466 177 - 22036055 ---------AAUGGCAGAGCUUAGUUAUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUC-CUCC-GAGGUGCGUUUAUUGCUAGUUGAAAACUUAAACCAAUAGCCCCGCCAUGGGGACGUGAAAUACCGUC-CACUACGGCAAUUUUUGGAAGCCCGAGAGGGC-UAAUUAAAUAAUUAAUAUGG----- ---------....((((((.........)))))).(((((((((((.((((.((...((....-.)).-..))))))..)))))))).)))..........(((.((((((.(((.((((((((........))))-).))).)))...((((((....))))))))))-))(((((....))))).)))----- ( -50.60, z-score = -1.17, R) >anoGam1.chr3L 5199224 183 - 41284009 ---------AAGGGCAAUGUUGGGUUAGCUUUGCGCAGUGGCGAUAUCGUAACCAAUGAGGUA-CAACCGAGGUGCGAUUAUUGCUAGUUGAAAACUAAUACCAAUA-CCCCGCCUUGGGGACGUGAAAUACCGUC-CGCUAUGGCAAUUUUUGCAAACCCCGAAAGGGGUAACAAUUCAUUAAACAAAAAGUAU ---------..(((...(((((((((((.(((...((((((((((((((((.((.....((..-...))..))))))).)))))))).))).)))))))).))))))-.)))(((.((((((((........))))-).))).)))...........(((((....)))))........................ ( -60.50, z-score = -2.76, R) >droAna3.scaffold_12916 8998607 171 - 16180835 ----------UUUCCAGGGAAUAGUUAUCUUUGCGCAGCGGCAAUAUCGUAACCAAUGAAGUC-CUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUC-CACUACGGCAAUUUUUGGGAGCCCGAGAGGGC-CAAUU-AAUAAUAAAU--------- ----------.((((((((....((((........((((((((((((((((.((.....((..-...))..))))))).))))))).)))).......)))).....-.)))(((.((((((((........))))-).))).)))......)))))((((....))))-.....-..........--------- ( -53.26, z-score = -2.36, R) >consensus __________UUGGCAGUGUUUGGUUAUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUC_CUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUA_CCCCGCCAUGGGGACGUGAAAUACCGUC_CACUACGGCAAUUUUUGGAAGCCCGAGAGGGC_UAAUUAAAUAAUAAAUAUGA_____ .............................((..((....((((((((((((.((.....((......))..)))))))).))))))......................((((.....)))).))..))...((((......))))............((((....)))).......................... (-34.62 = -33.58 + -1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:03 2011