| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,130,202 – 21,130,295 |
| Length | 93 |
| Max. P | 0.749293 |
| Location | 21,130,202 – 21,130,295 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 67.13 |
| Shannon entropy | 0.60064 |
| G+C content | 0.50215 |
| Mean single sequence MFE | -27.38 |
| Consensus MFE | -14.64 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21130202 93 - 23011544 -GAUCU-UUACUUCGUAUGGUACGUAUAUGUGGCGCUGUCCUCCGAAUUCGGGGAGGUUGGCGUUGAGUUUGUGGCGCUUGCUGAUGUUGUAUCU -.....-...........((((((.((((..(((((((.(((((........))))).))))))).(((..(.....)..))).)))))))))). ( -24.50, z-score = 0.01, R) >droEre2.scaffold_4845 19226007 90 + 22589142 -GAUCU-UUACUUUGUGUGGUACGUAUAUGGGGCGCUGUCCUCCGAUUUCGAGGAGGUUGGCGUCGAGUGCGUCGCACUUGCUGAUG---UAUCU -.....-...........(((((((......(((((((.(((((........))))).)))))))((((((...))))))....)))---)))). ( -32.20, z-score = -1.90, R) >droAna3.scaffold_12943 1429093 87 + 5039921 -GAUUA-UUACUUUGGAUA------GUAUGUGGCGCUAUCCUCCGAUCUCGGGGAGGUUGGCGUCGAGUAACUCGCACUGCCUGAUGUGGUUUCU -((..(-((((.(..(.((------((....(((((((.(((((........))))).)))))))(((...)))..)))).)..).))))).)). ( -30.00, z-score = -1.87, R) >dp4.chr4_group1 327399 90 + 5278887 -ACUCA-UUACUUGGGAUAGUA---GUAUGUGGCGCUACUCUCUGAUGUGGUGGAGGUGGGCGUGGAGCUUGACGCGCUCCCUGUUGUGCUUUCU -..(((-((((.(.(((.((((---((.......)))))).))).).)))))))(((.(((((((........))))))))))............ ( -31.40, z-score = -1.34, R) >droPer1.super_5 265889 90 - 6813705 -ACUCA-UUACUUGGGAUAGUA---GUAUGUGGCGCUACUCUCUGAUGUGGUGGAGGUGGGCGUGGAGCUUGACGCGCUCCCUGUUGUGCUGUCU -..(((-((((.(.(((.((((---((.......)))))).))).).)))))))(((.(((((((........))))))))))............ ( -31.40, z-score = -1.05, R) >droWil1.scaffold_180772 4052295 80 + 8906247 GGAUCAUUUACUUUAGCCG------AUAUGUUGCACUAUUCUCCGAUGAGGGGGAAGUUGACGUUGAAU-UAUCGCUUGUUGCAUUU-------- .(((.(((((.........------..((((((.(((.((((((.....))))))))))))))))))))-.)))((.....))....-------- ( -14.80, z-score = 0.64, R) >consensus _GAUCA_UUACUUUGGAUAGUA___AUAUGUGGCGCUAUCCUCCGAUGUCGGGGAGGUUGGCGUCGAGUUUGUCGCGCUUCCUGAUGUG_UAUCU ................................((((((.(((((........))))).))))))(((((.......))))).............. (-14.64 = -14.70 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:58 2011