| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,126,656 – 21,126,734 |
| Length | 78 |
| Max. P | 0.592098 |
| Location | 21,126,656 – 21,126,734 |
|---|---|
| Length | 78 |
| Sequences | 3 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 90.95 |
| Shannon entropy | 0.12471 |
| G+C content | 0.39585 |
| Mean single sequence MFE | -16.47 |
| Consensus MFE | -15.65 |
| Energy contribution | -15.77 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.592098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21126656 78 - 23011544 AAGGCGACAGGCUUUGCUUGAUAAUGACCCCUUUCGAAAGUAUCUCUUUACCAGGUCAAGCCUAAAAAUACUUAAUGA--- .((((..(((((...)))))....(((((.......((((.....))))....))))).))))...............--- ( -17.40, z-score = -1.53, R) >droSec1.super_18 1045159 81 - 1342155 AAGGCGACAGGCUUUGCUUGAUAAUGACCCCUUUUCAAAGUAUCUCUUUACCGGGUAAAGCCCACAAAUACUUAUUAAUGA ..(....).(((((((((((.(((.((...(((....)))....)).))).)))))))))))................... ( -16.00, z-score = -0.77, R) >droSim1.chr2L 20706458 81 - 22036055 AAGGCGACAGGCUUUGCUUGAUAAUGACCCCUUUUCAAAGUAUCUCUUUACCGGGUAAAGCCCACAAAUACUUAUUAAUGA ..(....).(((((((((((.(((.((...(((....)))....)).))).)))))))))))................... ( -16.00, z-score = -0.77, R) >consensus AAGGCGACAGGCUUUGCUUGAUAAUGACCCCUUUUCAAAGUAUCUCUUUACCGGGUAAAGCCCACAAAUACUUAUUAAUGA ..(....).(((((((((((.(((.((...(((....)))....)).))).)))))))))))................... (-15.65 = -15.77 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:57 2011