| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,111,220 – 21,111,323 |
| Length | 103 |
| Max. P | 0.664956 |
| Location | 21,111,220 – 21,111,323 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 122 |
| Reading direction | forward |
| Mean pairwise identity | 69.34 |
| Shannon entropy | 0.49782 |
| G+C content | 0.35757 |
| Mean single sequence MFE | -18.34 |
| Consensus MFE | -11.12 |
| Energy contribution | -12.48 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21111220 103 + 23011544 ------------------AAAUUUGAUUGCAAGCUGGGAAAAUACGACAUUUAAAAUGCAUUUCAAAGUCA-CAGAUGCUGAAAACAAAGUCAGUCGUGCCAGCAAAUAAACAAUGACCACU ------------------..............(((((.....((((((.........((((((........-.))))))(((........)))))))))))))).................. ( -18.80, z-score = -0.46, R) >droEre2.scaffold_4845 19207549 117 - 22589142 AAACAAGUAAAACCUAAAAGUCGUAAGUAUAAGUAAUAUAAAAU--ACACUUAAAGUGUAUUUUCAAACUCAGAGGUGAUGAAAACAAAUACAGUCGUGCCAGCAAAUAAACAAUGUAC--- ..........................(((((........(((((--((((.....)))))))))..........(((.((((............))))))).............)))))--- ( -13.30, z-score = 0.06, R) >droYak2.chr2R 19481394 104 - 21139217 ------------------AAAUAUUAUUAUAGGCUGGGAAAAUACGACAUUUAAAAUGUAUUUUCAAAUAAACAGGUGCUGCAUACAAAGUCAGUCGUGCCAGCAAAUAAUCAAUGCACACU ------------------...(((((((((..((((((((((((((..........))))))))).......((.(.(((((.......).))))).)))))))..))))).))))...... ( -21.70, z-score = -2.00, R) >droSec1.super_18 1029712 90 + 1342155 -------------------------------AGCUGGGCAAAUACGACAUCUAAAAUGCAUUUCAAAGUCA-CAGAUGCUGAAAACAAAGUCAGUCGUGCCAGCAAAUAAACAAUGUCCACU -------------------------------.(((((.....((((((.........((((((........-.))))))(((........)))))))))))))).................. ( -18.80, z-score = -1.44, R) >droSim1.chr2L 20690969 90 + 22036055 -------------------------------AGCUGGGCAAAUACGACAUCUAAAAUGCAUUUCGAAGUCA-CAGAUGCUGAAAACAAAGUCAGUCGUGCCAGCAAAUAAACAAUGUCCACU -------------------------------.(((((.....((((((.........((((((.(......-)))))))(((........)))))))))))))).................. ( -19.10, z-score = -1.23, R) >consensus __________________A____U_A_U__AAGCUGGGAAAAUACGACAUUUAAAAUGCAUUUCAAAGUCA_CAGAUGCUGAAAACAAAGUCAGUCGUGCCAGCAAAUAAACAAUGUCCACU ................................(((((.....((((((.........((((((..........))))))(((........)))))))))))))).................. (-11.12 = -12.48 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:54 2011