Locus 2688

Sequence ID	dm3.chr2L
Location	21,101,820 – 21,101,934
Length	114
Max. P	0.696749

overview

Window 4

Location	21,101,820 – 21,101,934
Length	114
Sequences	12
Columns	120
Reading direction	forward
Mean pairwise identity	68.83
Shannon entropy	0.67006
G+C content	0.51713
Mean single sequence MFE	-38.56
Consensus MFE	-10.23
Energy contribution	-9.71
Covariance contribution	-0.52
Combinations/Pair	1.67
Mean z-score	-1.98
Structure conservation index	0.27
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.44
SVM RNA-class probability	0.696749
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 21101820 114 + 23011544
AAAGGCGCAGGCUGUAUCGCCACCUUUGUAGAGAUCCAUAAGGUGGCAGGUUAAAA---UAGUAUCUCC---AGGACCCAGCGUCAAGGACACAGUCUUUUUCAGCACACCAGCUCGCCA
...((((.(((((((...((((((((((........)).)))))))).........---.......(((---..(((.....)))..))).))))))).....(((......))))))). ( -36.00, z-score =  -2.56, R)
>droSim1.chr2L 20679676 114 + 22036055
AAAGGCGCAGGCUGUGUCGCCACCUUUGUAGAGAUCCAUAAGGUGGCAGGUUAAAA---UAGUAUUUCC---AGGACCCAGCGUCAAGGGCACAGUUUUUUUCAGCACACCAGCUCGCCA
...((((..(((((((((((((((((((........)).)))))))).((..((((---(.((...(((---..(((.....)))..))).)).)))))..)).).))).))))))))). ( -38.00, z-score =  -2.58, R)
>droSec1.super_18 1020821 114 + 1342155
AAAGGCGCAGGCUGUGUCGCCACCUUUGUAGAGAUCCAUAAGGUGGCAGGUUAAAA---UAGUAUUUCC---AGGACCCAGCGUCAAGGGCACAGUUUUUUUCAGCACACCAGCUCGCCA
...((((..(((((((((((((((((((........)).)))))))).((..((((---(.((...(((---..(((.....)))..))).)).)))))..)).).))).))))))))). ( -38.00, z-score =  -2.58, R)
>droYak2.chr2R 19473366 114 - 21139217
AAAGGCGCAGGCUGUGUCGCCUCCUUUGUACAGAUUCAUAAGGUGGCAGGUUAAAA---UAGUUUCUCC---AUUACCCAGGGUAAAGGACACGGUUUUUUUCAGCACACCAGCCCGCCA
...((((..((((((((((((.((((((........)).)))).))).((..((((---(.((...(((---.(((((...))))).))).)).)))))..)).).))).))))))))). ( -38.40, z-score =  -2.78, R)
>droEre2.scaffold_4845 19198732 114 - 22589142
AAAGGCGCAGGCUGUGUCGCCACUUUUGUACAGAUUCAUAAGGUUGCAGGUUAAAA---UAGUUUCUCC---AUUACUAAGCGUCAAGGACACGGUUUUUUUCAGCACACCAGCCCGCCA
...((((..(((((((((((.(((((((........)).))))).)).((..((((---(.((...(((---...((.....))...))).)).)))))..)).).))).))))))))). ( -27.60, z-score =  -0.58, R)
>droAna3.scaffold_12943 1402494 120 - 5039921
AAAGGCGCAGGCUGUUUCGCCGCCCUUGUAGAGGUUCAGGAGGUGGCACGUUAGAACCGUGGUGUUUCCCUCGGCGCACAAUUUCAGGGAUGUGGAAUGCUUCAGCACGCCAGCCGCCCA
...((.((.((((((..(((((((((((........)))).))))))......(..(((.((......)).)))..).........)..))..((..(((....)))..)))))))))). ( -43.10, z-score =   0.13, R)
>dp4.chr4_group1 289043 111 - 5278887
AAAGGCGCAGGCGGUGUCGCCGCCCCGGUACAGAUUCAAUAGGUUGCAGGUUAAGACUUGAAAAUCUGC---------CAAUUUUAGAUGCACCAUUGUUUUGAGGACGCCCGCCCGCCA
...((((..(((((((((((((...)))).((((..((((.(((.(((..((((((.(((.........---------))))))))).)))))))))).))))..)))).))))))))). ( -38.90, z-score =  -1.84, R)
>droPer1.super_5 227780 111 + 6813705
AAAGGCGCAGGCGGUGUCGCCGCCCCGGUACAGAUUCAAUAGGUUGCAGGUUAAGACUUGAAAAUCUGC---------CAAUUUUAGAUGCACCAUUGUUUUGAGGACGCCCGCCCGCCA
...((((..(((((((((((((...)))).((((..((((.(((.(((..((((((.(((.........---------))))))))).)))))))))).))))..)))).))))))))). ( -38.90, z-score =  -1.84, R)
>droWil1.scaffold_180772 4003112 117 - 8906247
AAAGGCGCAGGCAGAAUCACUUCCUUUAUAAAUGUCAAGCAAAUUGCAGGUCAAAAUCUGUGUAGGUUC---AUCGCCCAGCUGCAUCUUUAUAGUCUUUUGUAGCACACCGGUGCGCCA
...(((((((((.(((((..............((.....))....((((((....))))))...)))))---...)))..((((((..............)))))).......)))))). ( -32.04, z-score =  -1.56, R)
>droVir3.scaffold_12963 9685241 117 - 20206255
GAAGGCGCACGCGGUGUCGCCCUCCUUGUACAAGUUUAGCAGAUUGCACGUGAGGAUUUGCAGGCCUUC---GGUGCCCAGCUGCAAUUGAAUGUUCUUUUGCAGCACGCCCGUGCGCCA
...((((((((.(((((.((..((((..(...((((.....))))....)..))))...)).((((...---.).)))..(((((((..((....))..)))))))))))))))))))). ( -52.20, z-score =  -3.41, R)
>droMoj3.scaffold_6500 13120888 117 - 32352404
AAAGGCGCACGCGGUGUCGCCUUCCUUGUACAGAUUCAGCAGAUUACACGUAAGUAUUUGCAGACCUUC---UGCACCCAGUUGUAUGUUCACAUUCUUUUGCAGCACGCCGGUGCGCCA
...(((((((.((((((..........((.((((.((.((((((...((....)))))))).))...))---)).))...((((((..............))))))))))))))))))). ( -41.64, z-score =  -3.26, R)
>droGri2.scaffold_15252 8620052 117 - 17193109
AAAGGCGCACGCGGUGUCGCCCUCUUUGUACAGAUUGAGCAGAUUGCACGUGAGGAUUUGCAAGCCCUG---UUCACCCAGUUUCAGGCUGAUGUUCUUUUGCAGUACACCGGUUCGCCA
...((((.((.((((((((((.(((......))).(((((((.((((((....)....)))))...)))---))))..........)))...(((......)))).)))))))).)))). ( -38.00, z-score =  -0.92, R)
>consensus
AAAGGCGCAGGCUGUGUCGCCACCUUUGUACAGAUUCAGAAGGUUGCAGGUUAAAA__UGAGUAUCUCC___AGCACCCAGCUUCAAGGGCACAGUUUUUUUCAGCACACCAGCCCGCCA
...((((..(((((....((..((.................))..))..............................................((......)).......))))))))). (-10.23 =  -9.71 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:52 2011