| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,097,110 – 21,097,223 |
| Length | 113 |
| Max. P | 0.536822 |
| Location | 21,097,110 – 21,097,223 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 90.97 |
| Shannon entropy | 0.16063 |
| G+C content | 0.47694 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -26.46 |
| Energy contribution | -26.66 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.536822 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21097110 113 + 23011544 AUUGCAAAGGCAUUGCAGAACUCUAAGAACACAUCUCCUCCGCACCCGCAUCCGGAAACGGAUUGGGAAUAUCGGAAAAUGUGGCCCAACUUUUUGGCUGUCGUUUCCCUACU .((((((.....))))))..........................((((.(((((....)))))))))......(((((..(..(((.........)))..)..)))))..... ( -31.10, z-score = -1.13, R) >droSim1.chr2L 20674385 113 + 22036055 AGUGCAAAGGCAUUGUAGAACUCUAAAAACACAUCUCCUCCGCACCCGCAUCCGGAAACGGAUUGGGAAAAUCGGAAAAUGUGGCCCAACUUUGUAGCUGUCGUUUCCCUACU (((((((((((....(((....)))....(((((....((((..((((.(((((....))))))))).....))))..))))))))....)))))).)).............. ( -32.00, z-score = -1.82, R) >droSec1.super_18 1016050 113 + 1342155 AGUGCAAAGGCAUUGUAGAACUCUAAAAACACAUCUCCUCAACACCCGCAUCCGGAAACGGAUUGGGAAAAUCGGAAAAUGUGGCCCAACUUUGUAGCUGUCGUUUCCCUACU (((((((((((....(((....)))....(((((.(((......((((.(((((....)))))))))......)))..))))))))....)))))).)).............. ( -31.20, z-score = -2.00, R) >droYak2.chr2R 19468664 113 - 21139217 AAGGCAAAGACAUUGUAGAACUCCACAGACACUUCUCCUCCGCACCCGUAUCCGGAAACGGAUUGGGAAAUUCGGAAAAUGUGGCCCAACUUUGUAGCUGUCGUUUCCCUACU ..((((...(((..((.(....(((((((....))...((((..((((.(((((....))))))))).....))))...)))))..).))..)))...))))........... ( -31.40, z-score = -1.32, R) >droEre2.scaffold_4845 19193877 112 - 22589142 -AGGCAAAAGCAUUGUAGAGUUCCAAAAGCACUUCUCCUUCGCACCCGCAUCCGGAAACGGAUUGGGAAAAUAGGAAAAUGUGGCCCAACUUUGUAGCUGUCGUUUCCCUACU -(((.(((.(((((((((((((......(((.((.((((.....((((.(((((....))))))))).....)))).))))).....)))))))))).)))..))).)))... ( -31.30, z-score = -1.17, R) >consensus AAUGCAAAGGCAUUGUAGAACUCUAAAAACACAUCUCCUCCGCACCCGCAUCCGGAAACGGAUUGGGAAAAUCGGAAAAUGUGGCCCAACUUUGUAGCUGUCGUUUCCCUACU ..............((((..........................((((.(((((....)))))))))......(((((..(..((...........))..)..))))))))). (-26.46 = -26.66 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:51 2011