| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,069,788 – 21,069,881 |
| Length | 93 |
| Max. P | 0.807839 |
| Location | 21,069,788 – 21,069,881 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 69.80 |
| Shannon entropy | 0.51640 |
| G+C content | 0.47504 |
| Mean single sequence MFE | -20.56 |
| Consensus MFE | -10.09 |
| Energy contribution | -10.21 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807839 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21069788 93 - 23011544 UGCUACGCUCACGAGAGCGGACGUGCAGUGCGGAAAAAUCCGACAAAAUCAGGCAAAGUCCCCAGAUCCAAAACUAUAUACGGAAUAAGCAAA------------- ((((..((((....))))((((.(((..((((((....)))).)).......)))..)))).....(((............)))...))))..------------- ( -23.40, z-score = -1.93, R) >droSim1.chr2L 20651392 92 - 22036055 UGCUACGCUCACGAGAGCGGACGUGCAGUGCGGAAAAAUCCGACGAAAUCAGGCAAAGUCCCCAGAUCC-AAACUAUAUACGGAAUAAGCAAA------------- ((((..((((....))))((((.(((.((.((((....))))))(....)..)))..)))).....(((-...........)))...))))..------------- ( -23.50, z-score = -1.52, R) >droSec1.super_18 986272 92 - 1342155 UGCUACGCUCACGAGAGCGGACGUGCAGUGCGGAAAAAUCCGACGAAAUCAGACAAAGUCCCCAGAUCC-AAACUAUAUACGGAAUAAGCAAA------------- ((((..((((....))))((((.....((.((((....))))))(....).......)))).....(((-...........)))...))))..------------- ( -20.70, z-score = -1.23, R) >droYak2.chr2R 19442025 105 + 21139217 UGCUACGCUCACGAGAGCGGACGUGCAGUGCGGAAAAAUCCGACAAAAUCAGGCAAAGUCCCCAGAUCC-AAACUAAAUACGGAAUAAGCUAAGAUACAAAAACGC .(((..((((....))))((((.(((..((((((....)))).)).......)))..)))).....(((-...........)))...)))................ ( -22.30, z-score = -1.11, R) >dp4.chr4_group1 250948 72 + 5278887 UGCUACGCUCUCGAGAGCGGACGUGCCGUGCGGACAAUAUCCAAAAAACC--UCAGAGCUCCAAAA----AAAAUAUA---------------------------- ......(((((.(((.((((.....))))..(((.....))).......)--))))))).......----........---------------------------- ( -17.70, z-score = -1.95, R) >droPer1.super_5 189604 72 - 6813705 UGCUACGCUCUCGAGAGCGGACGUGCCGUGCGGACAAUAUCCAAAAAACC--UCAGAGCUCCAAAA----AAAAUAUA---------------------------- ......(((((.(((.((((.....))))..(((.....))).......)--))))))).......----........---------------------------- ( -17.70, z-score = -1.95, R) >droMoj3.scaffold_6500 13080347 76 + 32352404 UGCUACGCUCACGAGAGCGGACGUGCUGCGCGGAAAAUCAGAGCUAA---AGGCACAAAACACAUAU---AAAAUAAACGCA------------------------ .((..(((((....)))))...(((((..((.(.....)...))...---.)))))...........---.........)).------------------------ ( -18.60, z-score = -1.41, R) >consensus UGCUACGCUCACGAGAGCGGACGUGCAGUGCGGAAAAAUCCGACAAAAUCAGGCAAAGUCCCCAGAUCC_AAACUAUAUACGGAAUAAGC_AA_____________ .(((.(((((....)))))..(((.....)))........................)))............................................... (-10.09 = -10.21 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:49 2011