| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,062,880 – 21,062,976 |
| Length | 96 |
| Max. P | 0.838781 |
| Location | 21,062,880 – 21,062,976 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 69.25 |
| Shannon entropy | 0.61243 |
| G+C content | 0.45876 |
| Mean single sequence MFE | -27.14 |
| Consensus MFE | -13.16 |
| Energy contribution | -14.96 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.838781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21062880 96 + 23011544 AUAGACCGCAAUUUGCUGCCUUGGAAAACCUAUUGAAGGCGGCAGUGGGCGAGGCAAGCAGUUCACCUCAAUUGCCCCGCAAUUAAUUGAUAUAUG---- .....((((....(((((((((.((.......)).)))))))))))))(((.(((((..((.....))...))))).)))................---- ( -31.50, z-score = -2.08, R) >droAna3.scaffold_12943 1361934 84 - 5039921 AUAGACCGCAAUUUGCCGCCUUG-AAAGCCCAUUGAGGGCGUUAGUGGGCUAUGGGGGUAGUGCACUUCAAUUAAUUGAUACUUG--------------- .......(((...((((.((...-..((((((((((.....))))))))))..)).)))).)))...((((....))))......--------------- ( -26.10, z-score = -1.22, R) >droEre2.scaffold_4845 19160599 94 - 22589142 AUAGACCGCAAUUUGCUGGCUUGGAAAGCCUAGUG--GGCGGCAGUGGGCGAGGCGAGUAGCUCACCUCAAUUGCACCGCAAUUAAUUGCUGUAUG---- ....((.((((((..((((((.....)))).))..--)((((..(..(..((((.(((...))).))))..)..).)))).....))))).))...---- ( -32.00, z-score = -0.50, R) >droYak2.chr2R 19435078 98 - 21139217 AUAGACCGC--UUUGCUGCCUUGGAAAACCUAUUGAAGACGGCAGUGGGCGAGGCGAGUAGUUCACCUAAACUGGCCCGCAAUUAAUUGAUAUACAUAUG .....((((--(..((((.(((.((.......)).))).)))))))))(((.(((.(((...........))).)))))).................... ( -26.30, z-score = -1.17, R) >droSec1.super_18 979344 96 + 1342155 AUAGACCGCAAUUUGCUGCCUUGGAAAACCUAUUGAAGGCGGCAGUGGGCAAGGCGAGCAGCUCACCUCAAUUGCCGCGCAAUUAAUUGAUAUAUG---- ........((((((((((((((.((.......)).)))))))))((((((((((.(((...))).)))....)))).)))....))))).......---- ( -30.90, z-score = -1.38, R) >droSim1.chr2L 20644434 96 + 22036055 AUAGACCGCAAUUUGCUGCCUUGGAAAACCUAUUGAAGGCGGCAGUGGGCGAGGCGAGCAGCUCACCUCAAUUGCCCCGCAAUUAAUUGAUAUAUG---- .......((....(((((((((.((.......)).)))))))))(.((((((((.(((...))).))))....)))))))................---- ( -32.90, z-score = -2.17, R) >droWil1.scaffold_180772 3948960 83 - 8906247 CUAGAAGUCAAAUU-CAGUUUUUCAUUUGCAGUUGAAUACUUUGAUCGGUGUU-----UAAUU---UUCUAUUAGUUAACAACUUUUUUACA-------- .((((((.(((((.-.........))))))(((((((((((......))))))-----)))))---))))).....................-------- ( -10.30, z-score = -0.09, R) >consensus AUAGACCGCAAUUUGCUGCCUUGGAAAACCUAUUGAAGGCGGCAGUGGGCGAGGCGAGUAGUUCACCUCAAUUGCCCCGCAAUUAAUUGAUAUAUG____ .......(((((((((((((((.((.......)).)))))))))((((((..........))))))...))))))......................... (-13.16 = -14.96 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:48 2011