Locus 2683

Sequence ID	dm3.chr2L
Location	21,034,588 – 21,034,658
Length	70
Max. P	0.571125

overview

Window 8

Location	21,034,588 – 21,034,658
Length	70
Sequences	5
Columns	70
Reading direction	reverse
Mean pairwise identity	85.20
Shannon entropy	0.24331
G+C content	0.40324
Mean single sequence MFE	-16.00
Consensus MFE	-12.70
Energy contribution	-13.14
Covariance contribution	0.44
Combinations/Pair	1.06
Mean z-score	-1.46
Structure conservation index	0.79
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.16
SVM RNA-class probability	0.571125
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 21034588 70 - 23011544
CCUCCAGAUAUAUACUUACAUACAUGUAUAGUAUAAAUGUGGCUGGAGGAUGUUCUCUAUCUUUUCUGGC
(((((((...((((((((((....)))).)))))).......)))))))..................... ( -17.70, z-score =  -1.67, R)
>droSim1.chr2L_random 849783 70 - 909653
CCUCCAGAUAUAUUCUUACAUACAUGCAUAGUAUAAAUGUGGCUGGAGGAUGUUCUCUACCUUCUCUGGC
(((((((.((((((..(((...........)))..)))))).)))))))..........((......)). ( -18.70, z-score =  -1.84, R)
>droSec1.super_18 959061 70 - 1342155
CCUCCAGAUAUAUUCUUACAUACAUGCAUAGUAUAAAUGUGGCUGCAGGAUGUUCUCUACCUUUUCUGGC
(((.(((.((((((..(((...........)))..)))))).))).)))..........((......)). ( -11.90, z-score =   0.29, R)
>droYak2.chr2R 19412504 59 + 21139217
CCUCCAGAUAUAUACUUA-----------AAUAUAAAUGUGGCUGGAGGAUGUUCCCUACCUUUUCUGGC
(((((((...((((.(((-----------....))).)))).)))))))..........((......)). ( -14.60, z-score =  -1.66, R)
>droEre2.scaffold_4845 19140351 59 + 22589142
CCUCCAGAUAUAUACUUA-----------AAUAUAAAUGUGGCUGGAGGAUGUUCCCUGCCUUUUCUGGC
(((((((...((((.(((-----------....))).)))).))))))).........(((......))) ( -17.10, z-score =  -2.43, R)
>consensus
CCUCCAGAUAUAUACUUACAUACAUG_AUAGUAUAAAUGUGGCUGGAGGAUGUUCUCUACCUUUUCUGGC
(((((((.(((((...(((...........)))...))))).)))))))..........((......)). (-12.70 = -13.14 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:47 2011