| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,034,301 – 21,034,351 |
| Length | 50 |
| Max. P | 0.992132 |
| Location | 21,034,301 – 21,034,351 |
|---|---|
| Length | 50 |
| Sequences | 8 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 68.68 |
| Shannon entropy | 0.61028 |
| G+C content | 0.45538 |
| Mean single sequence MFE | -10.78 |
| Consensus MFE | -5.68 |
| Energy contribution | -5.59 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.52 |
| SVM RNA-class probability | 0.992132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21034301 50 - 23011544 UGACAUGUGGGAAACUGCAGGCCGAAGGGCAUUA--AAAACAGAUCGA-UUGC .....((..(....)..)).(((....)))....--............-.... ( -13.80, z-score = -2.78, R) >droSim1.chr2L_random 849476 50 - 909653 UGACAUGUGGGAAACUGCAGGCCGAAGGGCAUUA--AAAACAGAUCGA-UUGC .....((..(....)..)).(((....)))....--............-.... ( -13.80, z-score = -2.78, R) >droSec1.super_18 958755 50 - 1342155 UGACAUGUGGGAAACUGCAGGCCGAAGGGCAUUA--AAAACAGAUCGA-UUGC .....((..(....)..)).(((....)))....--............-.... ( -13.80, z-score = -2.78, R) >droYak2.chr2R 19412235 50 + 21139217 UAACAUGUGGGAAACUGCAGGCCGAAGGGCAUUA--AGAACAGAUCGA-UAGC .....((..(....)..)).(((....)))....--............-.... ( -13.80, z-score = -3.44, R) >droEre2.scaffold_4845 19140068 50 + 22589142 UGACAUGUGGGAAACUGCAGGCCGAAGGGCAUUA--AAAACAGAUCGA-UUGC .....((..(....)..)).(((....)))....--............-.... ( -13.80, z-score = -2.78, R) >dp4.chr4_group1 207856 52 + 5278887 AGACACAGAGGGAGACA-GAGCCAUGGGGCAUCAUCAAAACGAAUCAAUUUGC .....((((..((....-(((((....))).)).((.....)).))..)))). ( -7.50, z-score = -0.68, R) >droPer1.super_5 146052 52 - 6813705 AGACACAGAGGGAGAAA-AAGCCGUGUGGCAUCAUCAAAACGAAUCAAUUUGC .....((((..((....-..(((....)))....((.....)).))..)))). ( -6.50, z-score = 0.35, R) >droMoj3.scaffold_6500 13045570 50 + 32352404 CAAAACACUAUAAAAAAAAAGCGGAAACUCGAUU--AGAAGGGAUUAAGUUC- .........................((((..(((--......)))..)))).- ( -3.20, z-score = -0.30, R) >consensus UGACAUGUGGGAAACUGCAGGCCGAAGGGCAUUA__AAAACAGAUCGA_UUGC ....................(((....)))....................... ( -5.68 = -5.59 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:46 2011