| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,032,749 – 21,032,839 |
| Length | 90 |
| Max. P | 0.689311 |
| Location | 21,032,749 – 21,032,839 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 95.67 |
| Shannon entropy | 0.07940 |
| G+C content | 0.32221 |
| Mean single sequence MFE | -21.09 |
| Consensus MFE | -17.69 |
| Energy contribution | -18.29 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21032749 90 + 23011544 GCUUUAUUAUGAAAAUUGCAGCAACGACAACAAUGUAUUGUUUUCCUUGUUAUUAUUUUUGUUGUUAGCGCUGUCAUUAUGAAAGCGAAA (((((...((((.....((.((((((((((.((((..................)))).)))))))).))))..))))....))))).... ( -19.67, z-score = -1.37, R) >droSim1.chr2L_random 847872 90 + 909653 GCUUUAUUAUGAAAAUUGCAGCAACGACAACAAUGUAUUGUUUUCCUUGUUAUUAUUUUUGUUGUUGGCGCUGUCAUUAUGAAAGCGAAA (((((...(((......(((((..(((((((((.(((.((..........)).)))..)))))))))..))))))))....))))).... ( -22.50, z-score = -2.16, R) >droSec1.super_18 957153 90 + 1342155 GCUUUAUUAUGAAAAUUGCAGCAACGACAACAAUGUAUUGUUUUCCUUGUUAUUAUUUUUCUUGUUGGCGCUGUCAUUAUGAAAGCGAAA (((..((...(((((....(((((.((.(((((....))))).)).))))).....)))))..)).)))(((.((.....)).))).... ( -16.70, z-score = -0.38, R) >droYak2.chr2R 19410595 89 - 21139217 GCUUUAUUAUGAAAAUUGCAGCAACGACAACAACGUAUUGUUUUCCUUAU-AUUAUUUUUGUUGUUGACGCUGUCAUUAUGAAAGCGAAA (((((...(((......(((((..(((((((((.(((.(((.......))-).)))..)))))))))..))))))))....))))).... ( -22.70, z-score = -3.08, R) >droEre2.scaffold_4845 19138428 88 - 22589142 -CUUUAUUAUGAAAAU-GCAGCAACGACAACAAGGGAUUGUUUUCCUUGUUAUUAUUUUUGUUGUUGGCGCUGUCAUUAUGAAAGCGAAA -.(((((.((((....-((..((((((((((((((((.....)))))))).........))))))))..))..)))).)))))....... ( -23.90, z-score = -2.80, R) >consensus GCUUUAUUAUGAAAAUUGCAGCAACGACAACAAUGUAUUGUUUUCCUUGUUAUUAUUUUUGUUGUUGGCGCUGUCAUUAUGAAAGCGAAA ((((..((((((.....(((((..(((((((((.........................)))))))))..)))))..)))))))))).... (-17.69 = -18.29 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:45 2011