| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,030,802 – 21,030,875 |
| Length | 73 |
| Max. P | 0.888058 |
| Location | 21,030,802 – 21,030,875 |
|---|---|
| Length | 73 |
| Sequences | 10 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 68.19 |
| Shannon entropy | 0.64723 |
| G+C content | 0.30294 |
| Mean single sequence MFE | -15.21 |
| Consensus MFE | -4.41 |
| Energy contribution | -3.89 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.888058 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 21030802 73 - 23011544 ----CAACGAGGGAG--AGAGAAAGAAAAAGCAAUUAAUAAUAAUUAAUGUUUUUAUCUUUUUGUUCAGCCUUCUCUCG----- ----...((((((((--(.((((((((((((((.(((((....)))))))))))).))))))).))......)))))))----- ( -19.30, z-score = -3.25, R) >droWil1.scaffold_180772 3914627 61 + 8906247 ------UAUACACACACAGAGAGAAAAAAGGCAAUUAAUAAUAAUUAAUGUUUUUAUCUUCUCUCUC----------------- ------...........((((((((.(((((((.(((((....))))))))))))...)))))))).----------------- ( -14.10, z-score = -4.85, R) >droGri2.scaffold_15252 8553008 58 + 17193109 ---------------------GAAAAAAGGGCAAUUAAUAAUAAUUAAUGUUUUUAUCUUUUUGUUCUGC----GCGCUCUCG- ---------------------......(((((((...((((.(((....))).))))....)))))))..----.........- ( -6.00, z-score = 0.22, R) >droMoj3.scaffold_6500 13040140 57 + 32352404 ----------------------AAAAAAAGGCAAUUAAUAAUAAUUAAUGUUUUUAUCUUUUUGUUCGACGC--GCGCUCG--- ----------------------....(((((((.(((((....)))))))))))).................--.......--- ( -4.40, z-score = 1.48, R) >droSim1.chr2L 20635699 73 - 22036055 ----CAACGAGGGAG--AGAGAAAGAAAAAGCAAUUAAUAAUAAUUAAUGUUUUUAUCUUUUUGUUCAGCCUUCUCUCG----- ----...((((((((--(.((((((((((((((.(((((....)))))))))))).))))))).))......)))))))----- ( -19.30, z-score = -3.25, R) >droSec1.super_18 955196 73 - 1342155 ----CAACGAGGGAG--AGAGAAAGAAAAAGCAAUUAAUAAUAAUUAAUGUUUUUAUCUUUUUGUUCAGCCUUCUCUCG----- ----...((((((((--(.((((((((((((((.(((((....)))))))))))).))))))).))......)))))))----- ( -19.30, z-score = -3.25, R) >droYak2.chr2R 19408575 71 + 21139217 ----CAGCGAGAG----AAAGAAAGAAAAAGCAAUUAAUAAUUAUUAAUGUUUUUAUCUUUUUAUUCAGCCUCCUCUCG----- ----...((((((----..((((((((((((((.(((((....)))))))))))).)))))))..........))))))----- ( -14.80, z-score = -2.58, R) >droEre2.scaffold_4845 19136452 75 + 22589142 ----CAACGAGAGAGGAAGAGAAAGAAAAAGCAAUUAAUAAUAAUUAAUGUUUUUAUCUUUUUGUUCAACCUCCUCUCG----- ----...(((((((((((.((((((((((((((.(((((....)))))))))))).))))))).))...))).))))))----- ( -23.10, z-score = -5.15, R) >dp4.chr4_group1 199424 84 + 5278887 GAGAAAGAAAAAGCAAACAAAAAAACAAUGGCAAUUAAUAAUAAUUAAUGUUUUUAUCUUUUUGUGCAGCGUUUGCGCUCUCUC ((((........((..(((((((......((((.(((((....)))))))))......))))))))).(((....))))))).. ( -15.70, z-score = -0.79, R) >droPer1.super_5 139124 83 - 6813705 CAGAGAAGAAAAGCAAAC-AAAAAACAAUGGCAAUUAAUAAUAAUUAAUGUUUUUAUCUUUUUGUGCAGCGUUUGCGCUCUCUC .(((((......((..((-(((((.....((((.(((((....)))))))))......))))))))).(((....)))))))). ( -16.10, z-score = -1.15, R) >consensus ____CAACGAGAGAG__AGAGAAAAAAAAAGCAAUUAAUAAUAAUUAAUGUUUUUAUCUUUUUGUUCAGCCUUCUCUCG_____ ....................(((((.(((((((.(((((....))))))))))))...)))))..................... ( -4.41 = -3.89 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:44 2011