Locus 2679

Sequence ID dm3.chr2L
Location 21,016,465 – 21,016,563
Length 98
Max. P 0.961242
window3673 window3674

overview

Window 3

Location 21,016,465 – 21,016,563
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 86.46
Shannon entropy 0.25916
G+C content 0.46544
Mean single sequence MFE -30.22
Consensus MFE -20.51
Energy contribution -20.82
Covariance contribution 0.31
Combinations/Pair 1.20
Mean z-score -2.67
Structure conservation index 0.68
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.69
SVM RNA-class probability 0.961242
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 21016465 98 + 23011544
AAAUUGCUUGUAGAAUAUUUGUGACAUUUUGUCAUGCCCGGCGAGUUAUGUGAGUUCGCCUCGUCGGCGGCGAGUGUGAGUGUGUCUAUAAGCCCCAC
.....((((((((((((((((((((.....)))))((((((((((....(((....))))))))))..)))......)))))).)))))))))..... ( -34.40, z-score =  -3.48, R)
>droPer1.super_5 118174 91 + 6813705
AAAUUGCUUGUAGAAUAUUUGUGACAUUUUGUCAUGCCCGGUAAGUUAUGUCGGCU-------GUGUGAGAGAGUAUCUAUGUGUGUGUAAGCUCCAC
.....(((((((..((((....((.(((((.(((((((((..(.....)..)))..-------)))))).))))).))...)))).)))))))..... ( -20.70, z-score =  -1.03, R)
>droEre2.scaffold_4845 19125327 94 - 22589142
AAAUUGCUUGUAGAAUAUUUGUGACAUUUUGUCAUGCCCGGCAAGUUAUGUGAGUUCGCCUCGGCGGCGG----UGUGAGUAUGUCUAUAAGCUCCAC
.....((((((((((((((((((((.....)))))((((((((.....)))....((((....)))))))----.)))))))).)))))))))..... ( -28.80, z-score =  -1.96, R)
>droYak2.chr2R 19397717 98 - 21139217
UAAUAGCUUGUAGAAUAUUUGUGACAUUUUGUCAUGCCCGGCAAGUCAUGUGAGUUCGCCUCGUCGCCGGAGAGUGUGAGUAUACCUAUAAGCCCCAC
.....((((((((.......(((((...(((((......))))))))))(((..((((((((.((....))))).)))))..)))))))))))..... ( -28.20, z-score =  -2.54, R)
>droSec1.super_18 944241 98 + 1342155
AAAUUGCUUGUAGAAUAUUUGUGACAUUUUGUCAUGCCCGGCGAGUUAUGUGAGUUCGCCUCGUCGGCGGCGAGUGUGAGUGUGUCUAUAAGCUCCAG
.....((((((((((((((((((((.....)))))((((((((((....(((....))))))))))..)))......)))))).)))))))))..... ( -34.80, z-score =  -3.51, R)
>droSim1.chr2L 20624785 98 + 22036055
AAAUUGCUUGUAGAAUAUUUGUGACAUUUUGUCAUGCCCGGCGAGUUAUGUGAGUUCGCCUCGUCGGCGGCGAGUGUGAGUGUGUCUAUAAGCCCCAC
.....((((((((((((((((((((.....)))))((((((((((....(((....))))))))))..)))......)))))).)))))))))..... ( -34.40, z-score =  -3.48, R)
>consensus
AAAUUGCUUGUAGAAUAUUUGUGACAUUUUGUCAUGCCCGGCAAGUUAUGUGAGUUCGCCUCGUCGGCGGCGAGUGUGAGUGUGUCUAUAAGCCCCAC
.....((((((((((((((..(.((((((((((......))))))..))))....(((((.....))))).....)..))))).)))))))))..... (-20.51 = -20.82 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 21,016,465 – 21,016,563
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 86.46
Shannon entropy 0.25916
G+C content 0.46544
Mean single sequence MFE -20.81
Consensus MFE -15.32
Energy contribution -16.02
Covariance contribution 0.69
Combinations/Pair 1.11
Mean z-score -1.63
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.22
SVM RNA-class probability 0.597725
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 21016465 98 - 23011544
GUGGGGCUUAUAGACACACUCACACUCGCCGCCGACGAGGCGAACUCACAUAACUCGCCGGGCAUGACAAAAUGUCACAAAUAUUCUACAAGCAAUUU
.....((((.((((................(((.....(((((...........))))).))).((((.....)))).......)))).))))..... ( -22.20, z-score =  -1.58, R)
>droPer1.super_5 118174 91 - 6813705
GUGGAGCUUACACACACAUAGAUACUCUCUCACAC-------AGCCGACAUAACUUACCGGGCAUGACAAAAUGUCACAAAUAUUCUACAAGCAAUUU
((((((.............................-------.(((..............))).((((.....))))......))))))......... ( -12.24, z-score =  -0.90, R)
>droEre2.scaffold_4845 19125327 94 + 22589142
GUGGAGCUUAUAGACAUACUCACA----CCGCCGCCGAGGCGAACUCACAUAACUUGCCGGGCAUGACAAAAUGUCACAAAUAUUCUACAAGCAAUUU
.....((((.((((..........----.....(((..(((((...........))))).))).((((.....)))).......)))).))))..... ( -22.40, z-score =  -2.16, R)
>droYak2.chr2R 19397717 98 + 21139217
GUGGGGCUUAUAGGUAUACUCACACUCUCCGGCGACGAGGCGAACUCACAUGACUUGCCGGGCAUGACAAAAUGUCACAAAUAUUCUACAAGCUAUUA
....(((((.(((((((..........((((((((.(((.....))).......))))))))..((((.....))))...))).)))).))))).... ( -23.40, z-score =  -1.14, R)
>droSec1.super_18 944241 98 - 1342155
CUGGAGCUUAUAGACACACUCACACUCGCCGCCGACGAGGCGAACUCACAUAACUCGCCGGGCAUGACAAAAUGUCACAAAUAUUCUACAAGCAAUUU
.....((((.((((................(((.....(((((...........))))).))).((((.....)))).......)))).))))..... ( -22.40, z-score =  -2.42, R)
>droSim1.chr2L 20624785 98 - 22036055
GUGGGGCUUAUAGACACACUCACACUCGCCGCCGACGAGGCGAACUCACAUAACUCGCCGGGCAUGACAAAAUGUCACAAAUAUUCUACAAGCAAUUU
.....((((.((((................(((.....(((((...........))))).))).((((.....)))).......)))).))))..... ( -22.20, z-score =  -1.58, R)
>consensus
GUGGAGCUUAUAGACACACUCACACUCGCCGCCGACGAGGCGAACUCACAUAACUCGCCGGGCAUGACAAAAUGUCACAAAUAUUCUACAAGCAAUUU
.....((((.((((........................(((((...........))))).(((((......)))))........)))).))))..... (-15.32 = -16.02 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:44 2011