| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,975,844 – 20,975,945 |
| Length | 101 |
| Max. P | 0.871786 |
| Location | 20,975,844 – 20,975,945 |
|---|---|
| Length | 101 |
| Sequences | 9 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 73.48 |
| Shannon entropy | 0.50808 |
| G+C content | 0.43062 |
| Mean single sequence MFE | -29.49 |
| Consensus MFE | -12.71 |
| Energy contribution | -13.02 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20975844 101 - 23011544 ---------CGCGUUUCGCCAUAUUGUUCUAAUUGCAGCCAUUUGUUUGGCUCU--UAGGAGCGAAAAUAAACUGUGGAACCCGAUGCGGAAUAAAGUGAAAUGCGUGUCGU----- ---------((((((((((....(((((((.((((...((((((((((.((((.--...))))..))))))...))))....))))..))))))).))))))))))......----- ( -32.30, z-score = -2.58, R) >droSim1.chr2L 20587285 101 - 22036055 ---------CGCGUUUCGCCAUAUUGUUCUAAUUGCAGCCAUUUGUUUGGCUCU--UAGGAGCGAAAAUAAACUGUGGAACCCGAUGCGGAAUAAAGUGAAAUGCGUGUCGU----- ---------((((((((((....(((((((.((((...((((((((((.((((.--...))))..))))))...))))....))))..))))))).))))))))))......----- ( -32.30, z-score = -2.58, R) >droSec1.super_18 908573 101 - 1342155 ---------CGCGUUUCGCCAUAUUGUUCUAAUUGCAGCCAUUUGUUUGGCUCU--UAGGAGCGAAAAUAAACUGUGGAACCCGAUGCGGAAUAAAGUGAAAUGCGUGUCGU----- ---------((((((((((....(((((((.((((...((((((((((.((((.--...))))..))))))...))))....))))..))))))).))))))))))......----- ( -32.30, z-score = -2.58, R) >droYak2.chr2R 19361791 101 + 21139217 ---------CGCGUUUCGCCAUAUUGUUCUAAUUGCAACCAUUUGUUUGGCUCU--UAGGACCGAAAAUAAACUGUGGAACCCGAUGAGAAAUAAAGUGAAAUGCGUGUCGU----- ---------((((((((((..((((..(((.((((...((((...(((((.((.--...)))))))........))))....)))).)))))))..))))))))))......----- ( -24.80, z-score = -1.50, R) >droEre2.scaffold_4845 19091286 100 + 22589142 ---------CGCGUUUCGCCACAUCGUUCUAAUUGCAGCCAUUUGUUUGGCUCU--UAGGACCGAAAAUAAACCGUGGAA-CCGAUGGGGAAUAAAGUGAAGUGCGUGUCGU----- ---------((((((((((....(((((((((..(.(((((......)))))))--))))).))).......(((((...-.).))))........))))))))))......----- ( -27.00, z-score = -0.27, R) >droAna3.scaffold_12943 1292033 98 + 5039921 ---------CGCAUUUCGCCAUAUUGUUCUAAUUGCAGCCAUUUGUUAGGCUG-AACAGCAUAAAAAAAAAAUUACUGA----AAUAAAGAAUAAAGUGAAAUGCGUGUCGU----- ---------((((((((((....(((((((.....(((((........)))))-..(((................))).----.....))))))).))))))))))......----- ( -26.29, z-score = -3.55, R) >dp4.chr4_group1 120060 111 + 5278887 UGGCGGGCUCACAUUUUGCCAUAUUGUUCUAAUUGCAGCCAUUUGUUAGGCUGUGAAAGAAUGGAAAUUGGAAACCCGA----GGC--AGAAUAAAGUGAAAUGCGUGUCGUGUCGU .((((.((((((((((((((...(..((((..(..(((((........)))))..).))))..)...((((....))))----)))--)))))...))))...)).))))....... ( -38.60, z-score = -3.31, R) >droPer1.super_5 57585 111 - 6813705 UGGCGGGCUCACAUUUUGCCAUAUUGUUCUAAUUGCAGCCAUUUGUUAGGCUGUGAAAGAAUGGAAAUUGGAAACCCGA----GGC--AGAAUAAAGUGAAAUGCGUGUCGUGUCGU .((((.((((((((((((((...(..((((..(..(((((........)))))..).))))..)...((((....))))----)))--)))))...))))...)).))))....... ( -38.60, z-score = -3.31, R) >droWil1.scaffold_180772 3858934 85 + 8906247 ---------AGCAUAUUGCCAUAUUGUUCUAAUUGCUGUCAUUUGUUAAGCU---------UCCCUUUCGAACGGCGGA-----------ACUCAACUGAAAUGCGUGUGUCGU--- ---------.((((((.((......(((.......(((((.((((..(((..---------...))).)))).))))).-----------....)))......))))))))...--- ( -13.20, z-score = 1.31, R) >consensus _________CGCGUUUCGCCAUAUUGUUCUAAUUGCAGCCAUUUGUUUGGCUCU__UAGGAUCGAAAAUAAACUGUGGAA_CCGAUG_GGAAUAAAGUGAAAUGCGUGUCGU_____ .........((((((((((....(((((((......((((........))))..........((...........))...........))))))).))))))))))........... (-12.71 = -13.02 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:41 2011