| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,974,654 – 20,974,779 |
| Length | 125 |
| Max. P | 0.852534 |
| Location | 20,974,654 – 20,974,779 |
|---|---|
| Length | 125 |
| Sequences | 12 |
| Columns | 125 |
| Reading direction | reverse |
| Mean pairwise identity | 86.23 |
| Shannon entropy | 0.30119 |
| G+C content | 0.35441 |
| Mean single sequence MFE | -27.92 |
| Consensus MFE | -19.15 |
| Energy contribution | -19.05 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20974654 125 - 23011544 UCGUUUUCGUUAUUGCCAUCUAUAAGUGCGUAAUUUACUUAAGCUGCUUUCGGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAAGGCAAUAAAUUAAUAAAACGCUCAGCCGCA ..(((((..(((((((((((((((((((((((...((.((((((((....)))))))))))))))))))..))))))(((............)))))))))))......)))))((......)). ( -32.10, z-score = -3.13, R) >dp4.chr4_group1 118128 125 + 5278887 UCUCCUUCUUGGUCGCAUUCUAUGAGUGCGUAAUUUACUUAAGCUGCUUUUGGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAAGGCAAUAAAUUAAUAAAACGCUGAGCAGCG ...((.....)).(((((((...)))))))............(((((((...((.......))((.(((((...((((((((((...........)).))))))))..))))).)).))))))). ( -28.80, z-score = -1.14, R) >droPer1.super_5 55708 125 - 6813705 UCUCCUUCUUGGUCGCAUUCUAUGAGUGCGUAAUUUACUUAAGCUGCUUUUGGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAAGGCAAUAAAUUAAUAAAACGCUGAGCAGCG ...((.....)).(((((((...)))))))............(((((((...((.......))((.(((((...((((((((((...........)).))))))))..))))).)).))))))). ( -28.80, z-score = -1.14, R) >droAna3.scaffold_12943 1290988 125 + 5039921 UCGGUUUCGUUAUUGCCAUCUAUAAGUGCGUAAUUUACUUAAGCUGCUUUCGGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAAGGCAAUAAAUUAAUAAAACGCUCAGCCGCA .(((((.(((((((((((((((((((((((((...((.((((((((....)))))))))))))))))))..))))))(((............))))))))))..........)))...))))).. ( -32.10, z-score = -2.76, R) >droEre2.scaffold_4845 19090196 125 + 22589142 UCGUUUUCGUUAUGGCCAUCUAUAAGUGCGUAAUUUACUUAAGCUGCUUUCGGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAGGGCAAUAAAUUAAUAAAACGCUCAGCCGCA ..(((((..((((.((((((((((((((((((...((.((((((((....)))))))))))))))))))..))))))........((......))))).))))......)))))((......)). ( -28.30, z-score = -1.16, R) >droYak2.chr2R_random 23561 125 - 67238 UCGUUUUCGUUAUUGCCAUCUAUAAGUGCGUAAUUUACUUAAGCUGCUUUGUGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAGGGCAAUAAAUUAAUAAAACGCUCAGCCGCU .((((((..(((((((((((((((((((((((...((.((((((........)))))))))))))))))..))))))........((......))))))))))......)))))).......... ( -29.90, z-score = -2.00, R) >droSec1.super_18 907390 125 - 1342155 UCGUUUUCGUUAUUGCCAUCUAUAAGUGCGUAAUUUACUUAAGCUGCUUUCGGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAGGGCAAUAAAUUAAUAAAACGCUCAGCCGCA ..(((((..(((((((((((((((((((((((...((.((((((((....)))))))))))))))))))..))))))........((......))))))))))......)))))((......)). ( -32.40, z-score = -2.87, R) >droSim1.chr2L 20586102 125 - 22036055 UCGUUUUCGUUAUUGCCAUCUAUAAGUGCGUAAUUUACUUAAGCUGCUUUCGGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAGGGCAAUAAAUUAAUAAAACGCUCAGCCGCA ..(((((..(((((((((((((((((((((((...((.((((((((....)))))))))))))))))))..))))))........((......))))))))))......)))))((......)). ( -32.40, z-score = -2.87, R) >droVir3.scaffold_12963 9551461 121 + 20206255 UCGUUUUUUCCAUU----UUCAUAAGCGCGUAAUUUACUUAAGCUGCUUUUGGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAAGGCAAUAAAUUAUAAAAUUCUACUCUUGAA ..............----((((...(((((((......(((((((......))))))))))))))((((((...((((((((((...........)).)))))))).))))))........)))) ( -21.80, z-score = -1.47, R) >droMoj3.scaffold_6500 12981846 119 + 32352404 UCGUUCUUUCCAUU----UUCAUAAGCGCGUAAUUUACUUAAGCUGCUUUUGGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAAGGCAAUAAAUUAUAAAAUUCCGCUCUCG-- ..............----.......(((((((......(((((((......))))))))))))))((((((...((((((((((...........)).)))))))).))))))..........-- ( -21.00, z-score = -1.46, R) >droGri2.scaffold_15252 8502860 121 + 17193109 UUGUUCUUUUCAUU----UUCAUAAGCGCGUAAUUUACUUAAGCUGCUUUUGGCUUAAUAUGCGCAUUUUAAUUGAUUUGUUCCACUAUCGUCAAGGUAAUAAAUUAUAAAAGUCUUCUUCAGCA .....(((((....----.......(((((((......(((((((......))))))))))))))........(((((((((((...........)).))))))))).)))))............ ( -22.10, z-score = -1.50, R) >droWil1.scaffold_180772 3856937 116 + 8906247 UCUUCCUCUCCGCUCGAAUCUAUAAGUGCGUAAUUUACUUAAGCUGCUUUUGGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAAGGCAAUAAAUU-AUAAAAUGCU-------- ...........((.((((((((((((((((((...((.(((((((......))))))))))))))))))..)))))))))..........((....))........-.......)).-------- ( -25.30, z-score = -2.48, R) >consensus UCGUUUUCGUUAUUGCCAUCUAUAAGUGCGUAAUUUACUUAAGCUGCUUUUGGCUUAAUAUGCGCAUUUUAAUAGAUUUGUUCCACUAUCGUCAAGGCAAUAAAUUAAUAAAACGCUCAGCCGCA .........................(((((((......(((((((......)))))))))))))).........((((((((((...........)).))))))))................... (-19.15 = -19.05 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:40 2011