| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,960,118 – 20,960,234 |
| Length | 116 |
| Max. P | 0.884294 |
| Location | 20,960,118 – 20,960,234 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 70.51 |
| Shannon entropy | 0.48393 |
| G+C content | 0.39978 |
| Mean single sequence MFE | -28.39 |
| Consensus MFE | -13.38 |
| Energy contribution | -16.70 |
| Covariance contribution | 3.31 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.884294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20960118 116 + 23011544 CGCUGCACUGUGAGAUACAUGCCACUAAUUCCUAAAUUCGUUCUCUAGUCGCUUGAGAAAGGAAAGCUCUCAAAAAUUUACCAAAGUAAUGGGUAUUUU-AAGUGUAGUCAUUCAGC .((((((((.((((((((..........(((((.......(((((.........))))))))))................(((......))))))))))-)))))))))........ ( -26.61, z-score = -1.43, R) >droSim1.chr2L 20571880 117 + 22036055 CGCUGCACUGCGAGAUACAUGCCACUAAUUCCUGAAUUCGUUCUCUAGUCAAUCGAAAAAGGAAAGCUCUCAAAAAUGCACAAAAGUAGUGGGUAUUUUUAAGUGUAGCCAUUCAGC .((((((((..(((((((...((((((.(((((...((((.............))))..))))).((..........)).......)))))))))))))..))))))))........ ( -33.22, z-score = -3.17, R) >droSec1.super_18 893120 117 + 1342155 CGCUGCACUGCGAGAUACAUGCCACUAAUUCCUGAAUUCGUUCUCUAGUCAAUCGAAAAAGGAAAGCUCUCAAAAAUGCAUAAAAAUAGUGGGUAUUUUUAAGUGUAGCCAUUCAGC .((((((((..(((((((...((((((.(((((...((((.............))))..))))).((..........)).......)))))))))))))..))))))))........ ( -33.32, z-score = -3.60, R) >droYak2.chr2R 19346240 103 - 21139217 CGCUGCACAACGAGAAACAUGGUGCGAAUUCCCGAAUUCGAUCUCUA-UUAGCCGGUUUAAGCUGUUAUUUAAAUAUAUUUGGGGAUCGUAAAC----UAAAACGGUG--------- ((((((((.............))))(((((....)))))((((((((-.......(((((((......))))))).....))))))))......----......))))--------- ( -20.42, z-score = 0.19, R) >consensus CGCUGCACUGCGAGAUACAUGCCACUAAUUCCUGAAUUCGUUCUCUAGUCAAUCGAAAAAGGAAAGCUCUCAAAAAUGCACAAAAAUAGUGGGUAUUUUUAAGUGUAGCCAUUCAGC .((((((((..(((((((...((((((.(((((...((((.............))))..))))).((..........)).......)))))))))))))..))))))))........ (-13.38 = -16.70 + 3.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:39 2011