| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,944,126 – 20,944,194 |
| Length | 68 |
| Max. P | 0.612234 |
| Location | 20,944,126 – 20,944,194 |
|---|---|
| Length | 68 |
| Sequences | 9 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 79.98 |
| Shannon entropy | 0.38782 |
| G+C content | 0.39156 |
| Mean single sequence MFE | -16.37 |
| Consensus MFE | -11.26 |
| Energy contribution | -11.01 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20944126 68 - 23011544 ------------CCGUUGUUGUUGCGGUUUUGACUUAUGCGCGCUCUUAAUUGUUGUUAAGAAGUGAAAAUCAGCAGCAG ------------.......((((((((((((.(((.........(((((((....)))))))))).)))))).)))))). ( -18.50, z-score = -1.49, R) >droWil1.scaffold_180772 3806659 76 + 8906247 UUGCUGUUGUUUCUGUUGUUGCUGCGGUUUUGACUUAUGGGCGCGCUUAAUUGUUGUUAAGAAGUGAAAAUCAUCA---- ..((....((..(....)..)).))((((((.((((...((((.((......))))))...)))).))))))....---- ( -14.00, z-score = 0.53, R) >droPer1.super_5 15462 61 - 6813705 -------------------UUUUGUGGUUUUGACUUAUGUACGCUCUUAAUUGUUGUAAAGAAGUGAAAAUCAGCAACAA -------------------..((((((((((.((((...(((((........).))))...)))).))))))).)))... ( -13.70, z-score = -1.85, R) >dp4.chr4_group1 77022 61 + 5278887 -------------------UUUUGUGGUUUUGACUUAUGUACGCUCUUAAUUGUUGUAAAGAAGUGAAAAUCAGCAACAA -------------------..((((((((((.((((...(((((........).))))...)))).))))))).)))... ( -13.70, z-score = -1.85, R) >droAna3.scaffold_12943 1258981 67 + 5039921 ------------UUGUUUCUGUUGGGGUUUUGACUUAUAUGGCCGCUUAAUUGUUGUUAAGAAUUGGGGGCC-CUAGCAC ------------.......((((((((((((.(.((...((((.((......)).))))..)).).))))))-)))))). ( -18.00, z-score = -1.24, R) >droEre2.scaffold_4845 19062922 68 + 22589142 ------------CUGUUGUUGUUGCGGUUUUGACUUAUGUGCGCUCUUAAUUGUUGUUAAGAAGUGAAAAUCAGCAGCAG ------------.......((((((((((((.(((.........(((((((....)))))))))).)))))).)))))). ( -18.50, z-score = -1.89, R) >droYak2.chr2R 19329712 68 + 21139217 ------------CUGUUGUUGUUGCGGUUUUGACUUAUGUGCGCUCUUAAUUGUUGUUAAGAAGUGAAAAUCAGCAGCAG ------------.......((((((((((((.(((.........(((((((....)))))))))).)))))).)))))). ( -18.50, z-score = -1.89, R) >droSec1.super_18 877377 68 - 1342155 ------------CCGGUGUUGUUGCGGUUUUGACUUAUGCGCGCUCUUAAUUGUUGUUAAGAAGUGAAAAUCAGCAGAAG ------------.........((((((((((.(((.........(((((((....)))))))))).)))))).))))... ( -13.90, z-score = 0.04, R) >droSim1.chr2L 20557337 68 - 22036055 ------------CCGUUGUUGUUGCGGUUUUGACUUAUGCGCGCUCUUAAUUGUUGUUAAGAAGUGAAAAUCAGCAGCAG ------------.......((((((((((((.(((.........(((((((....)))))))))).)))))).)))))). ( -18.50, z-score = -1.49, R) >consensus ____________CUGUUGUUGUUGCGGUUUUGACUUAUGUGCGCUCUUAAUUGUUGUUAAGAAGUGAAAAUCAGCAGCAG .....................((((((((((.(((.........(((((((....)))))))))).)))))).))))... (-11.26 = -11.01 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:35 2011