| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,942,869 – 20,942,963 |
| Length | 94 |
| Max. P | 0.901578 |
| Location | 20,942,869 – 20,942,963 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 82.80 |
| Shannon entropy | 0.23887 |
| G+C content | 0.57868 |
| Mean single sequence MFE | -21.28 |
| Consensus MFE | -16.30 |
| Energy contribution | -16.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901578 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20942869 94 - 23011544 AACACCAAUCACAACGGCCCCAUUUUCCGGGGAUAGCCCCACUCACCCCUUUCUCCACACGACAGCCACCGCUUGCAUAUGCAUAUGCACUCGG ...............(((..........((((....))))...........((.......))..))).(((..((((((....))))))..))) ( -20.10, z-score = -1.91, R) >droSec1.super_18 876108 91 - 1342155 CAUACCAAUCACAACGGCCCCAUUUUCCGGGGAUAGCCCCACU---CAUCCCCUUCACACGCCAGCCACCGUUUGCAUUUGCAUAUGCACUCGG ...............(((..........((((((((.....))---.))))))...........))).(((..(((((......)))))..))) ( -22.90, z-score = -2.71, R) >droEre2.scaffold_4845 19061616 85 + 22589142 ---ACCAAUCACAACGGCCCCCUUUUCCGGGGAUAGCCUCA------CCCCCCUCCACACGCUACCCGCCGCUUGCAUAUGCAUAUGCACUCGG ---.((........((((((((......)))).((((....------.............))))...))))..((((((....))))))...)) ( -20.83, z-score = -1.72, R) >consensus _A_ACCAAUCACAACGGCCCCAUUUUCCGGGGAUAGCCCCACU___CCCCCCCUCCACACGCCAGCCACCGCUUGCAUAUGCAUAUGCACUCGG ...............((((((........)))...)))..............................(((..(((((......)))))..))) (-16.30 = -16.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:34 2011