| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,935,554 – 20,935,664 |
| Length | 110 |
| Max. P | 0.615268 |
| Location | 20,935,554 – 20,935,664 |
|---|---|
| Length | 110 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 68.48 |
| Shannon entropy | 0.64249 |
| G+C content | 0.41697 |
| Mean single sequence MFE | -28.12 |
| Consensus MFE | -9.16 |
| Energy contribution | -11.23 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20935554 110 - 23011544 GUGAGUUGUCGUACAGAUAAAUAUGUUUAUUUGCCCGGACUUACAUUCCAGUCCAGUGUGC--CUCUGUGUUGGUGUGUAUCUGUGUGUGUUCAGAGCUGAGCAUAUAUUUA (((((((..((..((((((((....))))))))..)))))))))((.((((..(((.....--..)))..)))).))......(((((((((((....)))))))))))... ( -32.50, z-score = -2.76, R) >droAna3.scaffold_12943 1246133 84 + 5039921 -----------GAUAGUUAUCAUCUUACAAAUACCU--ACUCACACUUUCAUAGUAUCUGUGAGUUCAUGUAUCUGCAUCU---------------GCUGUCCACAUAUUUA -----------((((((........((((.......--(((((((..(.......)..)))))))...)))).........---------------)))))).......... ( -13.63, z-score = -1.23, R) >droEre2.scaffold_4845 19054649 108 + 22589142 GCGAGUUGUCAUACGGAUAAAUAUGCUUAUUUGCCCGGACUUACAUUCCAGUCCAGUGUGC--CGCUGUGUUGGUGCGUAUC--UGUGUGUUCCGAGCUGAGCACAUAUUUA (((.((.(((...(((.((((((....)))))).))))))..))...((((..(((((...--)))))..))))))).....--(((((((((......))))))))).... ( -30.70, z-score = -0.76, R) >droYak2.chr2R 19321048 110 + 21139217 GCAAGUUGUCAUACAGAUAAAUAUGUUUAUUUGCCCGGACUUACAUUCCAGGCCAGUGUGU--CUCUGUGUUGGUGCGUAUCUGUGUGUGUUCAGAGCUGAGCACAUAUUUA ((((((...((((........))))...)))))).((.(((.((((...((((......))--))..)))).))).)).....(((((((((((....)))))))))))... ( -31.20, z-score = -1.19, R) >droSec1.super_18 867609 110 - 1342155 GUGAGUUGUCGCACAGAUAAAUAUGUUUAUUUGCCCGGACUUACAUUCCAGUCCAGUGUGCG--UCUGUGUUGGUGAGUAUCUGUGUGUGUUCAGAGCUGAGCAUAUAUUUA ((((....))))(((((((......(((((..((.(((((.((((((.......)))))).)--)))).))..))))))))))))(((((((((....)))))))))..... ( -32.30, z-score = -2.03, R) >droSim1.chr2L 20548676 112 - 22036055 GUGAGUUGUCGCACAGAUAAAUAUGUUUAUUUGCCCGGACUUACAUUCCAGUCCAGUGUGUGCCUCUGUGUUGGUGAGUAUCUGUGUGUGUUCAGAGCUGAGCAUAUAUUUA (((((((..((..((((((((....))))))))..)))))))))...((((..(((.(.....).)))..)))).........(((((((((((....)))))))))))... ( -31.50, z-score = -1.72, R) >droPer1.super_5 6603 110 - 6813705 GUAGGGUAUCGUAUAGUCGUAAUUCUCCAGUGUUGCGCUAUUAAAUUUC--UCGUGUGUGUGGGUUAGUGUGUCUGUUUGUGUGGAUAUGUUCGAAGCUGUUCACAUAUUUA ...(((......((((.((((((........)))))))))).......)--))(((((((..((((((..((((..(....)..))))..))...))))...)))))))... ( -25.02, z-score = -1.67, R) >consensus GUGAGUUGUCGUACAGAUAAAUAUGUUUAUUUGCCCGGACUUACAUUCCAGUCCAGUGUGUG_CUCUGUGUUGGUGCGUAUCUGUGUGUGUUCAGAGCUGAGCACAUAUUUA ..........(((((((((.................(((.......)))...((((..(........)..))))....)))))))))(((((((....)))))))....... ( -9.16 = -11.23 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:31 2011