| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,929,191 – 20,929,253 |
| Length | 62 |
| Max. P | 0.802606 |
| Location | 20,929,191 – 20,929,253 |
|---|---|
| Length | 62 |
| Sequences | 11 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 70.85 |
| Shannon entropy | 0.56029 |
| G+C content | 0.36571 |
| Mean single sequence MFE | -13.70 |
| Consensus MFE | -5.26 |
| Energy contribution | -5.30 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.802606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20929191 62 - 23011544 -----------------UACUUUACAAGUAACUUACUCGGGCGGAUUUCGCGCACCUUGCUUAAUCGGGUUGAUGUACU -----------------.........((((....(((((((((.....)))((.....))....)))))).....)))) ( -12.80, z-score = -0.66, R) >droSim1.chr2R 17129289 58 - 19596830 ---------------------AAAUUGAUAACUUACUCGGGCGGAUUUCCUUUAUCUCGCUUAAUCAGGUUGUUGUACU ---------------------.....((((((((..(..(((((((.......))).))))..)..))))))))..... ( -13.70, z-score = -2.56, R) >droSec1.super_9 1841140 58 - 3197100 ---------------------UAAAUGAUAACUUACUCGGGCGGAUUUUCCUUAUCUCGCUUAAUCAGGUUGUUGUACU ---------------------...(..(((((((..(..(((((((.......))).))))..)..)))))))..)... ( -15.00, z-score = -3.07, R) >droYak2.chr2R 3091417 79 + 21139217 UAAAUGAUACAAAAUUAUACUUUACAAUUAACUUACUCGGGCGGAUUUUCCGCAGCUCGCUUAAUUAAGUUGAUGUACU ......................((((.((((((((.(..((((..((......))..))))..).)))))))))))).. ( -15.70, z-score = -2.43, R) >dp4.chr3 14834407 79 - 19779522 UAAAUUAUACAAAAUUAUACUUUACAAUUAACUUACUCGGGCGGAUUUUCCGCGGCUCUCUUGAUGAGGUUUAUAUACU ........................................((((.....))))(((.(((.....))))))........ ( -10.60, z-score = -0.69, R) >droPer1.super_4 2945005 79 + 7162766 UAAAUUAUACAAAAUUAUACUUUACAAUUAACUUACUCGGGCGGAUUUUCCGCGGCUCUCUUGAUGAGGUUUAUAUACU ........................................((((.....))))(((.(((.....))))))........ ( -10.60, z-score = -0.69, R) >droAna3.scaffold_13266 7456981 79 - 19884421 UAAAUGGUACAAAAUUAUACUUUACAACUAACUUACUCAGGCGGAUUUUCCGCAGCUCGCUUGAUGAGACUUAUGUACU .....(((((((((......)))........((((.(((((((..((......))..))))))))))).....)))))) ( -15.30, z-score = -1.98, R) >droEre2.scaffold_4845 10150669 79 + 22589142 UAAAUGAUACAAAAUUAUACUUUACAAUUAACUUACUCGGGCGGAUUUUCCGCAGUUCGCUUAAUUAGGUUAAGGUACU ......................(((..((((((((.(..((((((((......))))))))..).)))))))).))).. ( -16.70, z-score = -2.56, R) >droWil1.scaffold_180697 61889 62 - 4168966 -----------------UACUUUACAAUUAACUUACUCAGGCGGAUUUUCCGCAGCUCGCUUGAUAAGAUUCAAAUAUU -----------------..............((((.(((((((..((......))..)))))))))))........... ( -12.40, z-score = -2.72, R) >droMoj3.scaffold_6496 13827240 62 + 26866924 -----------------UACUUUACAAGUAACUUACUCGGGCGGAUUUUCCGCUGCUCGCUUGAUAAGAUUCAAGUAUU -----------------((((.....)))).........(((((.....)))))....((((((......))))))... ( -15.10, z-score = -2.15, R) >droGri2.scaffold_15245 11483194 62 + 18325388 -----------------UACUUUACAAGUAACUUACUCGGGCGGAUUUUCCGCUGUUCUCUUGAUAAGAUUCAAGUAUU -----------------((((.....)))).........(((((.....))))).....(((((......))))).... ( -12.80, z-score = -1.66, R) >consensus _________________UACUUUACAAUUAACUUACUCGGGCGGAUUUUCCGCAGCUCGCUUGAUAAGGUUGAUGUACU ........................................((((.....)))).......................... ( -5.26 = -5.30 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:30 2011