| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,865,265 – 20,865,357 |
| Length | 92 |
| Max. P | 0.840760 |
| Location | 20,865,265 – 20,865,357 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 61.01 |
| Shannon entropy | 0.79323 |
| G+C content | 0.46005 |
| Mean single sequence MFE | -23.98 |
| Consensus MFE | -11.11 |
| Energy contribution | -11.24 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.840760 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20865265 92 - 23011544 ------AUACCAGUGCAGGCUACGGUGGCCAAGACGGUGAGAGCCAAGAUCAUUUUUACACUCGACACCAUU---UUCAGGGAUUGAAAC-UACUUUUUUGG---------------- ------...((((((..((((.....)))).....(((....))).............)))((((..((...---....))..))))...-........)))---------------- ( -19.40, z-score = -0.18, R) >droSim1.chr2L 20484318 94 - 22036055 ------AUACCAGUGCAGGCUACGGUGGCCAAGACGGCGAGAGCCAAGAUCAUUUUUACACUCGACACCAUUUUCUUCAGGUUUUGAAAC-UACUUUUUGG----------------- ------...((((((..((((.....)))).....(((....))).............)))((((.(((..........))).))))...-.......)))----------------- ( -21.00, z-score = -0.79, R) >droSec1.super_18 783985 94 - 1342155 ------AUACCAGUGCAGGCUACGGUGGCCAAGACGGCGAGAGCCAAGAUCAUUUUUACACUCGACACCAUUUUCUUCAGGUUUUGAAAC-UACUUUUUGG----------------- ------...((((((..((((.....)))).....(((....))).............)))((((.(((..........))).))))...-.......)))----------------- ( -21.00, z-score = -0.79, R) >droYak2.chr2R 19259010 91 + 21139217 ------AUACCAGUGCAGGCUACGGUGGCCAAGACGGUGAGAGCCAAGAUCAAUUUUGCACUCGACACCAUU---UUAAAGCUCUAAAAC-UAUUUUUUGG----------------- ------...(.((((((((((.....)))).....(((....)))...........)))))).)........---........((((((.-....))))))----------------- ( -19.90, z-score = -0.45, R) >droEre2.scaffold_4845 18980139 91 + 22589142 ------AUACCAGUGCAGGCUGCGGUGGCCAAGACGGUGAGAGCCAAGAUCAUUUUUACACUCGACACCAUU---UUCACACUCUGAAAC-UAUUUUUUGG----------------- ------...(((.(((.....))).)))((((((.((((.(((..((((....))))...)))..))))..(---((((.....))))).-....))))))----------------- ( -21.00, z-score = -0.83, R) >droAna3.scaffold_12943 1178951 97 + 5039921 ------AUACCCGUGCAGGCCAGAGUGGCCAGAAUGGUAAGACCCAAGAAAAGUUUUACACUUGACACCAUUUUUCCAGAUUCGAAAGAA-ACUCUUUGGGUUU-------------- ------....((((...((((.....))))...))))..(((((((((((((((...............))))))).((.(((....)))-.))..))))))))-------------- ( -26.06, z-score = -1.93, R) >dp4.chr4_group3 4275988 107 + 11692001 ------CUACCCGUGCAGGCCAGAGUGGCCAAGAUGGUCAGGGCCAAGAUGAGCUUUACACUGGACACCAUUUUCACUGACAGGGUAAAU-UCUUGAUUUGAAGAGUAUAUAUU---- ------.(((((...((((((.....))))(((((((((((....(((.....)))....)))...))))))))...))...))))).((-((((......)))))).......---- ( -28.60, z-score = -0.66, R) >droPer1.super_1 1420205 107 + 10282868 ------CUACCCGUGCAGGCCAGAGUGGCCAAGAUGGUCAGGGCCAAGAUGAGCUUUACACUGGACACCAUUUUCACUGACAGGGUAAAU-UCUUGAUUUGAAGAGUAUAUAUU---- ------.(((((...((((((.....))))(((((((((((....(((.....)))....)))...))))))))...))...))))).((-((((......)))))).......---- ( -28.60, z-score = -0.66, R) >droWil1.scaffold_180708 8864563 105 - 12563649 UAUCAAGUACCCGUGCAGGCGAGAGUGGCCAAGAUGGUCAGGGCCAGAAUAAGUUUUACACUUGACACCAUUUUU---------GUUUUU-UUUUUUUCUGUAUUUUAUAUUUCA--- ....(((((...(((((((.(((((.(((.((((((((((((...((((....))))...)))))..))))))).---------)))...-))))).)))))))....)))))..--- ( -21.30, z-score = -0.75, R) >droVir3.scaffold_12963 9429025 100 + 20206255 ------AUACCCGUGCAGGCCAGGGCGGCCAGAAUGGCCACAGCCAGAACACGCCCCAUUUUGGAAACCAUUUUGUAGCAAUCGAAAUGA--AAUAAAUUGGCUUUAA---------- ------..........(((((((((((.......((((....)))).....)))))......(....)(((((((.......))))))).--.......))))))...---------- ( -27.60, z-score = -0.76, R) >droMoj3.scaffold_6500 12857930 103 + 32352404 ------AUACCCGUGCAGGCGAGGGCGGCCAGAAUGGCCAAAGCCAAGACAUGACCCACUUUCGAAACCAUUCUGAAACACUGGAUGGGGUUGUUGAUGCGAGCACAAA--------- ------......((((..(((..(((((((....((((....)))).....................((((((.........)))))))))))))..)))..))))...--------- ( -30.70, z-score = -0.50, R) >droGri2.scaffold_15252 12225199 109 + 17193109 ------AUACCCGUGCACGCCAAAGCGGCCAGAAUGGUCACAGCCAGAACAUGCCCAACACUUGACACCAUUUUGAAGCACUCGAAAGG---GAUGAUACGACCUAAGCAAUGUGGAG ------...(((((((.(((....)))(((((((((((....((........)).((.....))..)))))))))..)).(((....))---)..............)).))).)).. ( -22.60, z-score = 0.37, R) >consensus ______AUACCCGUGCAGGCCAGGGUGGCCAAGAUGGUCAGAGCCAAGAUAAGUUUUACACUCGACACCAUUUUCUUCAACUUGUAAAAC_UAUUUUUUGG_________________ ............((((.((((.....)))).....(((....)))..................).))).................................................. (-11.11 = -11.24 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:25 2011