| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,804,718 – 20,804,821 |
| Length | 103 |
| Max. P | 0.785222 |
| Location | 20,804,718 – 20,804,821 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 73.07 |
| Shannon entropy | 0.49953 |
| G+C content | 0.38201 |
| Mean single sequence MFE | -23.84 |
| Consensus MFE | -14.99 |
| Energy contribution | -14.97 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.785222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20804718 103 + 23011544 UGAAGUUUUUUACGAGUGCG-GCUAGGCAAAUGAUUUUGCUUGGUCAU-------GGAAGAUAUCAAAGUGAAAAAAGAGUGAAAGGCUUGGAAUGCUCUUUAGUGCUUAG (((.((((((((.(....)(-((((((((((....))))))))))).)-------))))))).)))(((((...(((((((..............)))))))..))))).. ( -25.94, z-score = -1.31, R) >droSim1.chr2L 20411634 103 + 22036055 UGAAGUUUUUUACGAGUGCG-GCUAGGCAAAUGAUUUUGCUUGGUCAU-------GGAAGAUAUCAAAGUGAAAAAAGAGUGAAAGGCUUGGAAUGCUCUUUAGCGCUUAG (((.((((((((.(....)(-((((((((((....))))))))))).)-------))))))).)))(((((...(((((((..............)))))))..))))).. ( -28.34, z-score = -1.80, R) >droSec1.super_18 715413 103 + 1342155 UGAAGUUUUUUACGAGUGCG-GCUAGGCAAAUGAUUUUGCUUGGUCAU-------GGAAGAUAUCAAAGUGAAAAAAGAGUGAAAGGCUUGGAAUGCUCUUUAGCGCUUAG (((.((((((((.(....)(-((((((((((....))))))))))).)-------))))))).)))(((((...(((((((..............)))))))..))))).. ( -28.34, z-score = -1.80, R) >droYak2.chr2R 11382191 102 - 21139217 UGAAGUUUUUUACGAGUGCG-GCUAGGCAAAUGAUUUUGCUUGGUCAUUGGUCAUGGAAGAUAUCAAAGUGAAAAAAGAGUGAAAGGCUCG-AAUGCUCUUUAG------- .((.(((((((((......(-((((((((((....))))))))))).((..((((.((.....))...))))..))...))))))))))).-............------- ( -27.00, z-score = -1.79, R) >droEre2.scaffold_4845 18924055 89 - 22589142 UGAAGUUUUU-ACGAGUGCG-GCUAGGCAAAUGAUUUCGCUUGGUCAU-------GGAAGAUAUCAAAGUGGAAAAAGAGUGAAAGGCUCGGAAUGCU------------- ...(((.(((-.(((((((.-.....))......((((((((..((((-------.((.....))...)))).....)))))))).)))))))).)))------------- ( -19.40, z-score = -0.42, R) >droGri2.scaffold_15252 12171594 104 - 17193109 UAACAUUUUUUGCAAGCUCAUGUUUAAUUAACGACUCAACUUGACCAA-------AGUGAAAGGCCAAGUGCGACUAUUGUUUUGAUAUAUAUAUAUAUAUUUUUGUUUUG .((((.(..((((((((....)))).............(((((.((..-------.......)).)))))))))..).))))..(((((((....)))))))......... ( -14.00, z-score = 0.52, R) >consensus UGAAGUUUUUUACGAGUGCG_GCUAGGCAAAUGAUUUUGCUUGGUCAU_______GGAAGAUAUCAAAGUGAAAAAAGAGUGAAAGGCUUGGAAUGCUCUUUAG_GCUUAG ...((((((((((........((((((((((....))))))))))..................((.....)).......))))))))))...................... (-14.99 = -14.97 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:20 2011