| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,803,601 – 20,803,702 |
| Length | 101 |
| Max. P | 0.558015 |
| Location | 20,803,601 – 20,803,702 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 82.46 |
| Shannon entropy | 0.30514 |
| G+C content | 0.55402 |
| Mean single sequence MFE | -27.84 |
| Consensus MFE | -18.82 |
| Energy contribution | -20.30 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20803601 101 + 23011544 ----GGGAUAAUUUUCCACGGCCCACUGUUCGGGAGCCACCCCCGAUGAUU------------GUUUGGCUCCCCGCCAUUGGCAACCCCGUGA-CGCAUUUUUACCCAACUCCCCCG ----(((.(((.....(((((..........((((((((..(.........------------)..)))))))).(((...)))....))))).-.......)))))).......... ( -28.52, z-score = -1.33, R) >droSim1.chr2L 20409590 113 + 22036055 ----GGGAUAAUUUUCCACGGCCCACUGUUCGGGAGCCACCCCCGAUGAUUUUCCCAACAUUUGUUUGGCUCCCUGCCAUUGGCAACCCCGUGA-CGCAUUUUUACCCAACUCCCCCG ----(((.(((.....(((((..........((((((((..(..((((..........)))).)..))))))))((((...))))...))))).-.......)))))).......... ( -31.12, z-score = -2.18, R) >droSec1.super_18 714373 103 + 1342155 --------------UCCACGGCCCACUGUUCGGGAGCCACCCCCGAUGAUUUUCCCAACAUUUGUUUGGCUCCCUGCCAUUGGCAACCCCGUGA-CGCAUUUUUACCCAACUCCCCCG --------------..(((((..........((((((((..(..((((..........)))).)..))))))))((((...))))...))))).-....................... ( -27.90, z-score = -2.87, R) >droYak2.chr2R 11381187 115 - 21139217 CUUCUGGAUAAUUUUUCACGGCCCACUGUUUGGGAGCCACCCC-AAUGAGUU-CCCAACAUUUGUUUGGCUCCCUGCCAUUGGCAACCCCCUAAACGCAUUUUC-CCCAACUCCCUCA .....(((............((.........((((((((..(.-((((....-.....)))).)..))))))))((((...))))...........))......-......))).... ( -25.05, z-score = -0.65, R) >droEre2.scaffold_4845 18922586 109 - 22589142 ----UGGAUAAUUUUCCACGGCCCACUGUUCGGGAGCCACCCCCAAUGUGUU-GCCAACAUUUGUUUGG-UCCUUGCCAUUGGCAACCCCUUAA-CGCAUUUUC-CCCAACUUCCCG- ----((((......))))(((......(((.(((((........((((((((-((((((....).))))-)..(((((...)))))......))-)))))))))-)).)))...)))- ( -26.60, z-score = -1.01, R) >consensus ____GGGAUAAUUUUCCACGGCCCACUGUUCGGGAGCCACCCCCGAUGAUUU_CCCAACAUUUGUUUGGCUCCCUGCCAUUGGCAACCCCGUGA_CGCAUUUUUACCCAACUCCCCCG ................(((((..........((((((((...(.((((..........)))).)..)))))))).(((...)))....)))))......................... (-18.82 = -20.30 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:20 2011