| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,802,440 – 20,802,495 |
| Length | 55 |
| Max. P | 0.950534 |
| Location | 20,802,440 – 20,802,495 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 92.73 |
| Shannon entropy | 0.10018 |
| G+C content | 0.49697 |
| Mean single sequence MFE | -11.77 |
| Consensus MFE | -11.84 |
| Energy contribution | -11.40 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.52 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20802440 55 - 23011544 CAGUCCAACUUGCCCAAGUGAAGUUGGAGUGCAGAUAGAAAACCCAAAUUCCCAG ((.((((((((((....)).)))))))).))........................ ( -11.90, z-score = -2.63, R) >droSec1.super_18 713271 55 - 1342155 CAGUCCAGCUUGCCCAAGUGGAGUUGGAGUGCAGACAGAAGACCCAAAUUAACAG ((.(((((((...((....))))))))).))........................ ( -11.70, z-score = -0.97, R) >droSim1.chr2L 20408422 55 - 22036055 CAGUCCAGCUUGCCCAAGUGGAGUUGGAGUGCAGACAGAAGACCCAAAUUAACAG ((.(((((((...((....))))))))).))........................ ( -11.70, z-score = -0.97, R) >consensus CAGUCCAGCUUGCCCAAGUGGAGUUGGAGUGCAGACAGAAGACCCAAAUUAACAG ((.(((((((..(....)..).)))))).))........................ (-11.84 = -11.40 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:19 2011