| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,799,001 – 20,799,053 |
| Length | 52 |
| Max. P | 0.997604 |
| Location | 20,799,001 – 20,799,053 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 88.89 |
| Shannon entropy | 0.15305 |
| G+C content | 0.36230 |
| Mean single sequence MFE | -8.20 |
| Consensus MFE | -8.20 |
| Energy contribution | -8.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.22 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20799001 52 + 23011544 -AACAAUAUAACAA-AGGGUAACACAAUGCUGAUUAAUGCACUGUGACGAAAUC -.............-.......((((.(((........))).))))........ ( -8.20, z-score = -1.68, R) >dp4.chr4_group3 4205747 54 - 11692001 AAAUAGCGAAACAAUGGGGUAACACAAUGCUGAUUAAUGCACUGUGACGAAAUU ......................((((.(((........))).))))........ ( -8.20, z-score = -0.99, R) >droPer1.super_1 1346380 54 - 10282868 AAAUAGCGAAACAAUGGGGUAACACAAUGCUGAUUAAUGCACUGUGACGAAAUU ......................((((.(((........))).))))........ ( -8.20, z-score = -0.99, R) >consensus AAAUAGCGAAACAAUGGGGUAACACAAUGCUGAUUAAUGCACUGUGACGAAAUU ......................((((.(((........))).))))........ ( -8.20 = -8.20 + 0.00)
| Location | 20,799,001 – 20,799,053 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 88.89 |
| Shannon entropy | 0.15305 |
| G+C content | 0.36230 |
| Mean single sequence MFE | -10.50 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.92 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.14 |
| SVM RNA-class probability | 0.997604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20799001 52 - 23011544 GAUUUCGUCACAGUGCAUUAAUCAGCAUUGUGUUACCCU-UUGUUAUAUUGUU- ........((((((((........)))))))).......-.............- ( -10.50, z-score = -2.34, R) >dp4.chr4_group3 4205747 54 + 11692001 AAUUUCGUCACAGUGCAUUAAUCAGCAUUGUGUUACCCCAUUGUUUCGCUAUUU ........((((((((........))))))))...................... ( -10.50, z-score = -3.22, R) >droPer1.super_1 1346380 54 + 10282868 AAUUUCGUCACAGUGCAUUAAUCAGCAUUGUGUUACCCCAUUGUUUCGCUAUUU ........((((((((........))))))))...................... ( -10.50, z-score = -3.22, R) >consensus AAUUUCGUCACAGUGCAUUAAUCAGCAUUGUGUUACCCCAUUGUUUCGCUAUUU ........((((((((........))))))))...................... (-10.50 = -10.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:18 2011