Locus 2655

Sequence ID	dm3.chr2L
Location	20,787,605 – 20,787,697
Length	92
Max. P	0.730322

overview

Window 0

Location	20,787,605 – 20,787,697
Length	92
Sequences	4
Columns	92
Reading direction	forward
Mean pairwise identity	64.31
Shannon entropy	0.59175
G+C content	0.39235
Mean single sequence MFE	-18.51
Consensus MFE	-10.70
Energy contribution	-10.26
Covariance contribution	-0.44
Combinations/Pair	1.40
Mean z-score	-0.74
Structure conservation index	0.58
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.53
SVM RNA-class probability	0.730322
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 20787605 92 + 23011544
ACACUACUGGAUUCUAUUCUAGUCGAUAAGUUGCUUUCUAUUCGAUUAUCUUGUCAAUUAUCGUCGAUAUCGAGUAGGCAUCGACACAAGUA
...(.((((((......)))))).)....((((...((((((((((.(((.((........))..)))))))))))))...))))....... ( -21.10, z-score =  -1.44, R)
>droSec1.super_18 698282 92 + 1342155
ACGCUAGUGUUUUCGAUUCUAGUCGAUAACUUGCUUUCUAUUCGAUUAUCUUGUCACACAUCGUUGAUAUCGAGUAGGCAACGACCCAAGUA
..((.(((....(((((....)))))..))).))..((((((((((.(((.((........))..))))))))))))).............. ( -20.80, z-score =  -1.20, R)
>droSim1.chr2L 20390963 92 + 22036055
ACGCUGGUGUUUUCGAUUCUAGUCGAUAACUUGCUUUCUAUUCGAUUAUCUGGUCACACAUUGUUGAUAUCGAGUAGGCAACGACCCAAGUA
..(((((((((.(((((....))))).)))((((...(((((((((.(((....((.....))..))))))))))))))))..)))..))). ( -22.80, z-score =  -1.30, R)
>triCas2.ChLG4 10498263 78 - 13894384
------------CCAGCUUGUGUUUAUCG-UCGAUGGUUAAUUGAUCUGCUCCUGAAAC-UCUCUGAUACUGAUCAAUCUGUAGCAUAAAUA
------------........(((((((.(-(..((((...(((((((.......((...-..)).......))))))))))).))))))))) (  -9.34, z-score =   0.98, R)
>consensus
ACGCUAGUGUUUUCGAUUCUAGUCGAUAACUUGCUUUCUAUUCGAUUAUCUUGUCAAACAUCGUUGAUAUCGAGUAGGCAACGACACAAGUA
.....................((((.....((((...(((((((((.(((...............))))))))))))))))))))....... (-10.70 = -10.26 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:16 2011