| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,735,633 – 20,735,726 |
| Length | 93 |
| Max. P | 0.974015 |
| Location | 20,735,633 – 20,735,726 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 94.41 |
| Shannon entropy | 0.09694 |
| G+C content | 0.51183 |
| Mean single sequence MFE | -33.14 |
| Consensus MFE | -29.10 |
| Energy contribution | -28.98 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.974015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20735633 93 - 23011544 GACUCCGAAGCGACGCCUCAUCGAUUCCUAGAGUUAGUGAGGUUAUGUCGCAGGCGGUUCGUACAUCCUUAAUUGUAGGAGCGCAAGCAUUGC ....(((..((((((((((((..((((...))))..)))))))...)))))...))).((.((((........)))).))((....))..... ( -34.80, z-score = -3.13, R) >droSim1.chr2L 20349298 93 - 22036055 GACUCCGAAGCGACGCCUCAGCGAUUCCUAGAGUUAGUGAGGUUAUGUCGCAGGCGAUUCGUACAUCCUUAAUUGUAGGAGCGCAAGCAUUGC .........(((((((((((..(((((...)))))..))))))...)))))..(((((((.((((........)))).))((....))))))) ( -31.30, z-score = -1.99, R) >droSec1.super_18 654485 93 - 1342155 GACUCCGAAGCGACGCCUCAGUGAUUCCUAGAGUUAGUGAGGUUAUGUCGCAGGCGAUUCGUACAUCCUUAAUUGUAGGAGCGCAAGCAUUGC .........(((((((((((.((((((...)))))).))))))...)))))..(((((((.((((........)))).))((....))))))) ( -34.80, z-score = -3.39, R) >droYak2.chr2R 11319006 93 + 21139217 GACUCCGAAGUGACGCCUCACCGAUUCCUAGAGUUAGUGAGGUUAUGUCUCAGGCGGUUCGCAAAUCCUUAAUUGUAGGAGCGCGAGUACUGC .........(.((((((((((..((((...))))..)))))))...))).)..(((((((((...((((.......))))..))))..))))) ( -31.60, z-score = -2.02, R) >droEre2.scaffold_4845 18860804 93 + 22589142 GACUCCGAAGCGACGCCUCAUCGAUUCCUAGAGUUAGUGAGGUUAUGUCGCAGGCGGUUCGUAAAUCCUUAAUUGUAGGAGCGCGAGUAUUGC ....(((..((((((((((((..((((...))))..)))))))...)))))...)))(((((...((((.......))))..)))))...... ( -33.20, z-score = -2.57, R) >consensus GACUCCGAAGCGACGCCUCAGCGAUUCCUAGAGUUAGUGAGGUUAUGUCGCAGGCGGUUCGUACAUCCUUAAUUGUAGGAGCGCAAGCAUUGC .........((((((((((((.(((((...))))).)))))))...)))))..(((((.......((((.......))))((....))))))) (-29.10 = -28.98 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:15 2011