| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,723,682 – 20,723,739 |
| Length | 57 |
| Max. P | 0.829935 |
| Location | 20,723,682 – 20,723,739 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 64.40 |
| Shannon entropy | 0.63729 |
| G+C content | 0.45453 |
| Mean single sequence MFE | -14.99 |
| Consensus MFE | -5.81 |
| Energy contribution | -6.79 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20723682 57 + 23011544 -----GCCAGAUACGAUACUGCAAAGGGGCAGGGUACGCCAAAUUAUCCCUGCUUAAUGUGC -----...............(((...((((((((.............))))))))....))) ( -15.12, z-score = -0.54, R) >droPer1.super_1 1266119 61 - 10282868 -GCGGACAGAAAAAAACCCUCCCUAUGAAGAGGGGAUAGAAAACAUUCGCCGCUUAAUUUGC -((((.(.........(((((........)))))....(((....))))))))......... ( -15.50, z-score = -2.06, R) >dp4.chr4_group3 4125410 61 - 11692001 -GCGGACAGAAAAAAACCCUCCCUAUGAAGAGGGGAUAGAAAACAUUCGCCGCUUAAUUUGC -((((.(.........(((((........)))))....(((....))))))))......... ( -15.50, z-score = -2.06, R) >droYak2.chr2R 11306819 59 - 21139217 ACAUAAUAAGAUACAGA--CAUAAUAAGGCAGGGUAAGCCAAAU-AUCCCUGCUUAAUUUGC .................--.......((((((((..........-..))))))))....... ( -12.20, z-score = -1.76, R) >droSec1.super_18 642584 54 + 1342155 -----GCAAGAUACGAU--UGCAAAGGGGCAGGGUAAGCCAAAU-AUCCCUGCUUAAUUUGC -----............--.(((((..(((((((..........-..)))))))...))))) ( -15.80, z-score = -1.55, R) >droSim1.chr2L 20337203 54 + 22036055 -----GCAAGAUACGAG--UGCAAAGGGGCAGGGUAAGCCAAAU-AUCCCUGCUUAAUUUGC -----............--.(((((..(((((((..........-..)))))))...))))) ( -15.80, z-score = -1.42, R) >consensus _____ACAAGAUACAAC__UGCAAAGGGGCAGGGUAAGCCAAAU_AUCCCUGCUUAAUUUGC ..........................((((((((.............))))))))....... ( -5.81 = -6.79 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:14 2011