| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,706,943 – 20,707,043 |
| Length | 100 |
| Max. P | 0.925594 |
| Location | 20,706,943 – 20,707,043 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 67.33 |
| Shannon entropy | 0.56340 |
| G+C content | 0.41999 |
| Mean single sequence MFE | -25.35 |
| Consensus MFE | -9.51 |
| Energy contribution | -11.43 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20706943 100 - 23011544 UGUUGACCAC---UUCACGCAGUUUUUAAUGCAACUACCAACCUCCGUACUUUGUAUAU---------CUGCAUGAGUGCAUUUCAAAUUCUCCAGCAGCGUGGCCAAUAAU (((((.((((---.....(((........)))..............((((((((((...---------.)))).))))))....................)))).))))).. ( -21.00, z-score = -1.46, R) >droSim1.chr2L 20304690 98 - 22036055 UGUUGGCCAC---UUCACGCACUUUUCGAUGCAACU--UAGCCUCCAUACUUUGUAUUU---------CAGCAGGAGUGCAUUUGAAAUUCGCCAGCAGCGUGGCCAAUAAU ((((((((((---((((.((((((((((((((((..--((.......))..))))))).---------..).))))))))...))))....((.....)))))))))))).. ( -30.40, z-score = -2.69, R) >droSec1.super_18 626235 98 - 1342155 UGUUGGCCAC---UUCACGCACUUUUCGAUGCAACU--UAGCCUCCAUACUUUGUAUUU---------CAGCAGGAGUGCAUUUGCAAUUCGCCAGCAGCGUGGCCAAUAAU ((((((((((---.....((((((((((((((((..--((.......))..))))))).---------..).))))))))..((((.........)))).)))))))))).. ( -30.60, z-score = -2.56, R) >droYak2.chr2R 11290019 108 + 21139217 UG-UGGCCACGUAUUUACGUAUUUUUUAAAGCAAC---UACUCUCCUUACUUUGUAUUUAAAUGCACCCCAUAAGAGUGCAUUUUAAAUUCGCCAGUAUCGUGGCCAAUAAU ..-((((((((((((..((.....(((((((....---((((((........(((((....))))).......))))))..)))))))..))..)))).))))))))..... ( -25.96, z-score = -3.33, R) >droEre2.scaffold_4845 18833118 82 + 22589142 ------------------------UGUUGCAUUACUUUGUAUUUACUUACUUUGUGCCUAAA------UGCCGGGAGUGCAUUUUGAAUUCGCCAAUAUCGUGGCCAACAAU ------------------------(((((((((.((..(((((((..(((...)))..))))------)))..)))))))...........((((......)))).)))).. ( -18.80, z-score = -0.97, R) >consensus UGUUGGCCAC___UUCACGCACUUUUUAAUGCAACU__UAACCUCCAUACUUUGUAUUU_________CAGCAGGAGUGCAUUUGAAAUUCGCCAGCAGCGUGGCCAAUAAU ((((((((((..................((((((.................)))))).................((((.........)))).........)))))))))).. ( -9.51 = -11.43 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:08 2011