| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,697,599 – 20,697,692 |
| Length | 93 |
| Max. P | 0.794858 |
| Location | 20,697,599 – 20,697,692 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 70.37 |
| Shannon entropy | 0.50516 |
| G+C content | 0.39118 |
| Mean single sequence MFE | -21.72 |
| Consensus MFE | -13.40 |
| Energy contribution | -12.40 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.794858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20697599 93 - 23011544 UGAAGCAAGAGGUGAAUAGGAAG-UCCAGCAUUUGGUUACAGCACAGAUGCUAAAAGUUUAUGG-GCUUGCAGUUUAAGGUGUUCAAAACCAUAA------ ....(((((..((((((.((...-.))((((((((((....)).))))))))....))))))..-.))))).......(((.......)))....------ ( -25.20, z-score = -2.07, R) >droAna3.scaffold_12916 7201593 100 - 16180835 -AAAAUAAAGGUUGUAAAGGAAGUUUUUACAAUUAGCCACAGCUUUUAUGUCUGGCCAUUAAGACAUAGGUAUUUCGGAAUAGUUAUGACAGUUAUUAUAU -..(((((..((..(((..........(((....(((....))).((((((((........)))))))))))...........)))..))..))))).... ( -17.80, z-score = -0.79, R) >droYak2.chr2R 11280857 93 + 21139217 UGAGGCAAGAGGUGAAAAGGAAU-UCCAGCAUUUGGUUACAGCACAGAUGCUAUAACCUUAUGG-AUUUGCAGUUUAAAGAGUUUAAAACUAUUA------ ....(((((((((.....((...-.))((((((((((....)).))))))))...)))))....-..))))(((((..........)))))....------ ( -20.00, z-score = -1.16, R) >droSec1.super_18 617272 93 - 1342155 CGAAGCAAGAGGUGAAUAGGAAG-UCCAGCAUUUGGUUACAGCACAGAUGCCAAAAGUUUAUGG-GCUUGCAGUUUAGGGUGUUCGAAACCAUUA------ ....(((((..((((((.((...-.)).(((((((((....)).))))))).....))))))..-.))))).......(((.......)))....------ ( -23.40, z-score = -1.19, R) >droSim1.chr2L 20316467 93 - 22036055 CGAAGCAAGAGGUGAAGGGGAAG-UCCAGCAUUUGGUUACAGCACAGAUGCCAAAAGUUUAUGG-GCUUGCAGUUUAGGGUGUUCGAAACCAUUA------ ((((.((.....((((..(.(((-(((((((((((((....)).)))))))..........)))-)))).)..))))...)))))).........------ ( -22.20, z-score = -0.41, R) >consensus CGAAGCAAGAGGUGAAAAGGAAG_UCCAGCAUUUGGUUACAGCACAGAUGCCAAAAGUUUAUGG_GCUUGCAGUUUAGGGUGUUCAAAACCAUUA______ ....(((((.........((.....)).(((((((((....)).)))))))...............))))).............................. (-13.40 = -12.40 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:07 2011