| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,692,273 – 20,692,352 |
| Length | 79 |
| Max. P | 0.500000 |
| Location | 20,692,273 – 20,692,352 |
|---|---|
| Length | 79 |
| Sequences | 5 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 61.61 |
| Shannon entropy | 0.61841 |
| G+C content | 0.47694 |
| Mean single sequence MFE | -22.02 |
| Consensus MFE | -10.18 |
| Energy contribution | -10.38 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 20692273 79 + 23011544 -----UAACCAAGAAAGUAUCUCAGCAUUGCAACUAGCGGAUGAGCUGAAGUAUCUGCUGGGUUGCAAGGCUGUUUAGGGCCCA -----...((.(((.....)))((((.((((((((((((((((........)))))))).)))))))).))))....))..... ( -27.80, z-score = -1.85, R) >droPer1.super_1 1227656 82 - 10282868 UGUCGGCGUCUCAAUCGCUUUGUAGAAUGCCAUCUCAAAACUAUG-UCAAAUGUUGGAUUGAAUGCAAAUGUGUCCCCC-UCCA ....((((((((((.....))).)).)))))..............-........((((..(.((((....)))).)...-)))) ( -12.50, z-score = 0.35, R) >dp4.chr4_group3 4086133 82 - 11692001 UGUCGGCGUCUCAAUCGCUUUGUAGAAUGCCAUCUCAAAACUAUG-UCAAAUGUUGGAUUGAAUGCAAAUGUGUCCCCC-UCCA ....((((((((((.....))).)).)))))..............-........((((..(.((((....)))).)...-)))) ( -12.50, z-score = 0.35, R) >droSec1.super_18 612058 78 + 1342155 -----UAACCAAGAAAGUAUCUCAGCAUUGCAGCUCGCGGAUGGGCUGAAGUAUCUGCUGGCUUGCAAGGCUGUUUUGG-CCCA -----...((((((........((((.((((((((.(((((((........))))))).))).))))).))))))))))-.... ( -27.70, z-score = -1.03, R) >droSim1.chr2L 20311227 78 + 22036055 -----UAACCAAGAAAGUAUCUCAGCACUGCAACUCGCGGAUGGGCUGAAGUAUCUGCUGGGUUGCAAGGCUGUUUUGG-CCCA -----...((((((........((((..(((((((((((((((........))))))).))))))))..))))))))))-.... ( -29.60, z-score = -2.20, R) >consensus _____UAACCAAGAAAGUAUCUCAGCAUUGCAACUCGCGGAUGGGCUGAAGUAUCUGCUGGAUUGCAAGGCUGUUUCGG_CCCA ...........(((.....)))((((.((((((((.(((((((........))))))).)).)))))).))))........... (-10.18 = -10.38 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:07 2011