| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,691,990 – 20,692,108 |
| Length | 118 |
| Max. P | 0.895387 |
| Location | 20,691,990 – 20,692,108 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 92.37 |
| Shannon entropy | 0.12544 |
| G+C content | 0.36928 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -26.11 |
| Energy contribution | -26.80 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.895387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20691990 118 - 23011544 UUAUGCGUUUGGCUUGCAUUUCGAUCCGUUGAUUGCGUUGAAUGCUUGUUUUCGGUUGGUUUUUAUUCAUAGUUGGAGGGAAACUGGAAAUUCUAGUAGAAUCCGAAAAUGGCUUCUA ....(((((..((..(((..((((....)))).)))))..)))))(..((((((((..(((((..((((....))))..)))))..)..((((.....)))))))))))..)...... ( -32.90, z-score = -2.11, R) >droSim1.chr2L 20310960 118 - 22036055 UUAUGCGUUUGGCUUGCAUUUCGAUCCGUUGAUUGCGUUGAAUGCUUGUUUCCAUGUGGUUUUUAUUCAUGGUUGGAUGGAAACUGGAAAUUCUAGUAGAAUCCGAAAAUGGUUUCUA ....(((((..((..(((..((((....)))).)))))..)))))..(((((((....(((((((((((....)))))))))))))))))).....(((((.((......)).))))) ( -33.20, z-score = -2.49, R) >droSec1.super_18 611790 118 - 1342155 UUAUGCGUUUGGCUUGCAUUUCGAUCCGUUGAUUGCGUUGAAUGCUUGUUUCCAUGUGGUUUUUAUUCAUGGUUGGAUGGAAACUGGAAAUUCUAGUAGAAUCCGAAAAUGGUUUCUA ....(((((..((..(((..((((....)))).)))))..)))))..(((((((....(((((((((((....)))))))))))))))))).....(((((.((......)).))))) ( -33.20, z-score = -2.49, R) >droYak2.chr2R 11275424 114 + 21139217 UUAUGCAUUUGGCUUGCAUUUCGAUCUGUUGAUUGCUAUGUAUGCUUGUUUU----UGGUUUUUAUUUAUAGUUGGAGGGAAACUGGAAAUUCUAGUAGAAUCUGAAAAUGGUUUCUA ...........((.(((((..(((((....)))))..))))).))(..((((----..(.(((((((...((((...((....))...))))..))))))).)..))))..)...... ( -26.30, z-score = -1.95, R) >consensus UUAUGCGUUUGGCUUGCAUUUCGAUCCGUUGAUUGCGUUGAAUGCUUGUUUCCAUGUGGUUUUUAUUCAUAGUUGGAGGGAAACUGGAAAUUCUAGUAGAAUCCGAAAAUGGUUUCUA ....(((((..((..(((..((((....)))).)))))..)))))..((((((....((((((((((((....)))))))))))))))))).....(((((.((......)).))))) (-26.11 = -26.80 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:06 2011