| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,672,044 – 20,672,149 |
| Length | 105 |
| Max. P | 0.737305 |
| Location | 20,672,044 – 20,672,149 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.91 |
| Shannon entropy | 0.31685 |
| G+C content | 0.48856 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -17.40 |
| Energy contribution | -18.53 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.737305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20672044 105 - 23011544 ----CCUCUUUUUUUCUCCCUGUGUCCCGUGGACUUGCCCAUAAAGUUCGCAGAUCGUUCACGGCGAUCAGGCAAUUGGCACUUAUGCAAAUGUCGCGGACUUACAGCU ----...............((((((((...)))).........((((((((.((((((.....)))))).((((....(((....)))...)))))))))))))))).. ( -31.40, z-score = -1.97, R) >droSim1.chr2L 20272304 100 - 22036055 -----CCUCUAUUUUCUCCCUGUGUUCCGUGGACUUGCCCAUAAAGUUCGCAGAUCGUUCACGGCGAUCA----AUUGGCACUUAUGCAAAUGUCGCGGACUUACAGCU -----..............((((.....((((......)))).((((((((.((((((.....)))))).----....(((....))).......)))))))))))).. ( -27.40, z-score = -1.74, R) >droYak2.chr2R 11255308 104 + 21139217 -----UCUACAUUUUUUCCCUGUGUCCCAUGGACUUUCCCAGAUCGUUCGCAGAUCGUUCACGGCGAUCAGCCAAAUGGCACUUAUGCAAAUGUCUCGGACUUACAGCU -----..............((((((((...))))..(((.(((.((((.(((((((((.....)))))).(((....))).....))).))))))).)))...)))).. ( -30.60, z-score = -2.94, R) >droEre2.scaffold_4845 18801081 94 + 22589142 UUUUCCUACCAUUUUCUCCCUGUGUCCCAUGGACUUGCCCAGAUUGUUCGCAGAUCGUUCACGACGA---------------UUAUGCAAAUGUCUCGGACUCACAGCU ...................((((((((...((((.......((....))((((((((((...)))))---------------)).)))....)))).))))..)))).. ( -20.20, z-score = -0.98, R) >consensus _____CCUCCAUUUUCUCCCUGUGUCCCAUGGACUUGCCCAGAAAGUUCGCAGAUCGUUCACGGCGAUCA____AUUGGCACUUAUGCAAAUGUCGCGGACUUACAGCU ...................(((((.....(((......)))....((((((.((((((.....)))))).........((......)).......)))))).))))).. (-17.40 = -18.53 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:05 2011