| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,668,615 – 20,668,715 |
| Length | 100 |
| Max. P | 0.882923 |
| Location | 20,668,615 – 20,668,715 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 88.33 |
| Shannon entropy | 0.16278 |
| G+C content | 0.34815 |
| Mean single sequence MFE | -19.84 |
| Consensus MFE | -19.25 |
| Energy contribution | -19.14 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.882923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20668615 100 - 23011544 GGUCUUCCUUUUCCACAUUUUGAUUUGCAAUUUAAUCUCUCGAAUGUUUAAAUACGUUUUAUUUGUGGAUUGAAUGUGGAUUUGAGUUUCCUUCGAGUAG ((.(((.....(((((((.(..(((..(((...........((((((......))))))...)))..)))..))))))))...)))...))......... ( -21.14, z-score = -1.77, R) >droSec1.super_18 588481 100 - 1342155 GGUCUUCCUUUUCCACAUUUUGAUUUGCAAUUUAAUCCCUCGAAUGUUGAAGUACAUUUUACUUGUGAAUUGACUGUGGAUUUGAGUUUCCUUCGAGCAG ((.(((.....((((((..(..(((..(((...........((((((......))))))...)))..)))..).))))))...)))...))......... ( -18.54, z-score = -0.56, R) >droSim1.chr2L 20268576 90 - 22036055 GGUCUUCCUUUUCCACAUUUUGAUUUGCAAUUUAAUCCCUCGAAUGUUGAAGUACAUUUUACUUGUGGAUUGAAUGUGGAUUUGAGUUUC---------- .......(((.(((((((.(..(((..(((...........((((((......))))))...)))..)))..))))))))...)))....---------- ( -19.84, z-score = -1.63, R) >consensus GGUCUUCCUUUUCCACAUUUUGAUUUGCAAUUUAAUCCCUCGAAUGUUGAAGUACAUUUUACUUGUGGAUUGAAUGUGGAUUUGAGUUUCCUUCGAG_AG .......(((.(((((((.(..(((..(((...........((((((......))))))...)))..)))..))))))))...))).............. (-19.25 = -19.14 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:04 2011