| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,641,187 – 20,641,300 |
| Length | 113 |
| Max. P | 0.732918 |
| Location | 20,641,187 – 20,641,300 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 70.38 |
| Shannon entropy | 0.57666 |
| G+C content | 0.40918 |
| Mean single sequence MFE | -20.17 |
| Consensus MFE | -10.99 |
| Energy contribution | -11.08 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.53 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20641187 113 - 23011544 UGAGGUCAUCGAUCGCCGUAAUGCGUUCCCUAAUUUUAUUUUCCAAUUGCAAGCGACGUUCGUCGUAGUUUUUAAAUUCAGCUUUGACCUUCAUUUUGUCUUCCAAUCUUCUC .(((((((..((.(((......))).))........................(((((....)))))..................)))))))...................... ( -19.00, z-score = -1.09, R) >droSim1.chr2L 20240025 113 - 22036055 UGAGGUCAUCGAUCGCCCUAAUGCGUUCCUUAAUUUUAUUUUCCAAUUUCUGGCGACGUUCGUCGUAGUUCAUAAAUUCAGCUUUGACCUUCAUUUUGUCUAGCAAUCUGCUC .(((((((..((.(((......))).))........................(((((....)))))..................)))))))..........(((.....))). ( -20.60, z-score = -0.88, R) >droSec1.super_18 560519 113 - 1342155 UGAGGUCAUCGAUCGUCCUAAUGCGUUCCUUAAUUUUAUUUUCCAAUUUCUGGCGACGUUCGUCGUAGUUCAUAAAUUCAGCUUUGACCUUCAUUUUGUCUAUCAAUCUGCUC .(((((((..((.(((......))).))........................(((((....)))))..................)))))))((..(((.....)))..))... ( -17.50, z-score = -0.37, R) >droYak2.chr2R 6983796 113 - 21139217 UGAGGUCUUCGAUCGCCCUAAUGCGUUUCUCAAUUUUAGCUUCCAAUAGCUGGCGACGUUCGUCGUAGAUCUUAAAUUCCGCAUGGACCUUCAUUUUUUCUUGCAUUCUACUC ((((((((..((.(((......)))..)).......(((((......)))))(((((....)))))))))))))......(((.(((..........))).)))......... ( -23.90, z-score = -1.06, R) >droEre2.scaffold_4845 18770520 111 + 22589142 UGAGGCCAUCGAUCGCUCCAAUGCGUUUCUUAAUUUUGGCUUCCAGUAGCUGGCGACUUUCGUCGUAGAUAUUAAAUUCCGCAAUGUCCUUCGUUUUGUCUUCCAUUCUUC-- .((((.((.(((......((.((((....(((((.((((((......)))).(((((....))))).)).)))))....)))).))....)))...)).))))........-- ( -21.40, z-score = -0.30, R) >droGri2.scaffold_15252 222010 109 - 17193109 UGGCGUUAUUAUUUAACAUAAUGCAUCCAC--AACAAAUUUUGCACUGGCCAUU--UUGUAACGGUAAGUGCUUUUUUGUCCACCACUUUUCCUUUGUCCCUUUCUCUUCCUC ..(((((((........)))))))......--.(((((....(((((.(((...--.......))).)))))...)))))................................. ( -18.60, z-score = -1.87, R) >consensus UGAGGUCAUCGAUCGCCCUAAUGCGUUCCUUAAUUUUAUUUUCCAAUUGCUGGCGACGUUCGUCGUAGUUCUUAAAUUCAGCAUUGACCUUCAUUUUGUCUUCCAAUCUGCUC .(((((((..((.(((......))).))........................(((((....)))))..................)))))))...................... (-10.99 = -11.08 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:01 2011