Locus 2638

Sequence ID	dm3.chr2L
Location	20,637,418 – 20,637,539
Length	121
Max. P	0.799924

overview

Window 1

Location	20,637,418 – 20,637,539
Length	121
Sequences	3
Columns	123
Reading direction	forward
Mean pairwise identity	81.42
Shannon entropy	0.25721
G+C content	0.49181
Mean single sequence MFE	-29.63
Consensus MFE	-22.10
Energy contribution	-21.00
Covariance contribution	-1.10
Combinations/Pair	1.18
Mean z-score	-1.87
Structure conservation index	0.75
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.73
SVM RNA-class probability	0.799924
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 20637418 121 + 23011544
GCUGAGAUUUCAGGACAAGAUGAGAUUCCCCACAUAACC--GACAAGGAGCAACUGGACAUUUGCGUGUGCGUCCUGGAAUAUCUCUUAGCACCACCCUAGCGUUACAAAUCGUUUCACUACA
((((((((((((((((..((......))..(((((..((--.....)).((((........))))))))).)))))))))....))))))).......(((.(..((.....))..).))).. ( -32.20, z-score =  -2.00, R)
>droSec1.super_18 555018 122 + 1342155
GCUGAAAUUCCAGGACAAGACCAC-CACCCCACAUAACCAAGACAAGGUGCAGCUGAACCUUCGCGCGUGCGUCCUGGAAUAUCUCAUAACACCACACUAGCCUUAUGGAUCGUUACACUUCA
...(((((((((((((........-...........(((.......)))((((((((....))).)).)))))))))))))(((.(((((..(.......)..))))))))........))). ( -27.50, z-score =  -1.34, R)
>droSim1.chrU 13437648 115 - 15797150
GCUGAGAUUCCAGGACAAGACCAC-CACCCCAUAUAACC--GACAAGGAGCAGCUGGACUUUCGCGCGUGCGUCCUGGAAUAUCUCAUAACACCACCCUAGCCGUAUGAAUAUUUACA-----
..((((((((((((((........-............((--.....)).((((((((....))).)).)))))))))))..))))))................(((........))).----- ( -29.20, z-score =  -2.27, R)
>consensus
GCUGAGAUUCCAGGACAAGACCAC_CACCCCACAUAACC__GACAAGGAGCAGCUGGACAUUCGCGCGUGCGUCCUGGAAUAUCUCAUAACACCACCCUAGCCUUAUGAAUCGUUACACU_CA
...((.((((((((((.....................((.......)).((((((((....))).)).))))))))))))).))....................................... (-22.10 = -21.00 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:55:00 2011