| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,637,213 – 20,637,328 |
| Length | 115 |
| Max. P | 0.544700 |
| Location | 20,637,213 – 20,637,328 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.08 |
| Shannon entropy | 0.34551 |
| G+C content | 0.46702 |
| Mean single sequence MFE | -34.80 |
| Consensus MFE | -18.67 |
| Energy contribution | -17.98 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.544700 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20637213 115 + 23011544 GCGGUUAACGACCAAAAGGGGCCAUUCAGGAUGACAACUGUUUG----UUAUUUUCGGUAUAGAAUGGCCAAGGAAGGGCGGG-CAUUACAUGAUCCUUCACCACAUCUACGGAUCGAGC ((((((...))))....((((((((((((((((((((....)))----))))))).......))))))))...(((((((((.-.....).)).)))))).))..(((....)))...)) ( -33.41, z-score = -1.65, R) >droSim1.chr2L 20233849 116 + 22036055 GCGGUUAGCGACCAAAAGGGGCCAUUCAGGAUGAUAACUGUUUG----UGAUUUUUGGUAAAGAAUAGACAAGGUAGGGAGGAUCGUGUAAUGAUCCUCCACCUUAUCUGAGGAUCGAGC .(((((..(.((((((((...(((..(((........)))..))----.).)))))))).......(((.(((((..((((((((((...))))))))))))))).))))..)))))... ( -40.20, z-score = -3.46, R) >droSec1.super_18 553726 116 + 1342155 GCGGUUAGCGACCAAAAGGGGCCAUUCAGGAUGAUAACUGUUUG----UGAUUUUUGGUAAAGAAUAGACAAGGUAGGGAGGAUCGUGUAAUGAUCCUCCACCACAUCUGAGGAUCGAGC .(((((.((..((....)).))..(((((.(((.....((((((----(..(((.....)))..))))))).(((..((((((((((...))))))))))))).)))))))))))))... ( -36.50, z-score = -2.37, R) >droYak2.chrU 2918404 109 + 28119190 ----------GCGGUUAGGUGUUAUUCAGGAUGAUAUCCUUUUGGAGUUUUUUUUUGGUAUAGAAUGGCCAAGGCAGGGCGGG-CAUCACAUGAUCCUCCACUAUAUCUGAGGAUCGAGC ----------((.....((((((.(((((((.(....).)))))))(((((.(((((((........))))))).))))).))-))))...((((((((..........)))))))).)) ( -29.10, z-score = -0.24, R) >consensus GCGGUUAGCGACCAAAAGGGGCCAUUCAGGAUGAUAACUGUUUG____UGAUUUUUGGUAAAGAAUAGACAAGGUAGGGAGGA_CAUGAAAUGAUCCUCCACCACAUCUGAGGAUCGAGC ....................(((((((.(((((....((((((...................))))))....((...((((((((((...)))))))))).)).)))))..)))).).)) (-18.67 = -17.98 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:59 2011