| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,619,866 – 20,619,922 |
| Length | 56 |
| Max. P | 0.728230 |
| Location | 20,619,866 – 20,619,922 |
|---|---|
| Length | 56 |
| Sequences | 8 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 89.38 |
| Shannon entropy | 0.21155 |
| G+C content | 0.41245 |
| Mean single sequence MFE | -7.88 |
| Consensus MFE | -7.47 |
| Energy contribution | -7.72 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20619866 56 + 23011544 UAUUUUAUAUGCCCACUUGUCAAAGCAAAGUGGAACACAAUCCUCGGAGUCCAAAC ............((((((((....)).)))))).......((....))........ ( -7.70, z-score = -0.31, R) >droSim1.chr2L 20183135 54 + 22036055 --UAUUUUAUGCCCACUUGUCACAGCAAAGUGGAACACAAUCCUCGGAGUCCAAAC --..........((((((((....)).)))))).......((....))........ ( -7.70, z-score = -0.07, R) >droSec1.super_18 500014 54 + 1342155 --UAUUUUAUGCCCACUUGUCACAGCAAAGUGGAACACAAUCCUCGGAGUCCAAAC --..........((((((((....)).)))))).......((....))........ ( -7.70, z-score = -0.07, R) >droYak2.chr2R 6968016 54 + 21139217 --UAUUUUAUGCCCACUUGUCAAAGCAAAGUGGAACACAAUCCUCCGAAUCCAAAC --..........((((((((....)).))))))....................... ( -7.40, z-score = -1.25, R) >droEre2.scaffold_4845 18755407 54 - 22589142 --UAUUUUAUGCCCACUUGUCAAAGCAAAGUGGAACACAAUCCCCGGAAUCCAAAC --..........((((((((....)).)))))).......((....))........ ( -7.70, z-score = -0.55, R) >droAna3.scaffold_12916 7120230 54 + 16180835 --UAUUUUAUGCCCACUUGUGAAAGCAAAGUGGAACACAAUCCGUACAAUCCCAGC --..........((((((((....)).))))))....................... ( -10.00, z-score = -1.56, R) >dp4.chr4_group3 3996995 54 - 11692001 --UAUUUUAUUCCCACUUGUCAAAGCAAAGUGGAACACAAUCCACACAAUCCAUAC --..........((((((((....)).))))))....................... ( -7.40, z-score = -2.10, R) >droPer1.super_1 1142145 54 - 10282868 --UAUUUUAUUCCCACUUGUCAAAGCAAAGUGGAACACAAUCCACACAAUCCAUAC --..........((((((((....)).))))))....................... ( -7.40, z-score = -2.10, R) >consensus __UAUUUUAUGCCCACUUGUCAAAGCAAAGUGGAACACAAUCCUCGGAAUCCAAAC ............((((((((....)).))))))....................... ( -7.47 = -7.72 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:56 2011