| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,609,365 – 20,609,500 |
| Length | 135 |
| Max. P | 0.611528 |
| Location | 20,609,365 – 20,609,500 |
|---|---|
| Length | 135 |
| Sequences | 4 |
| Columns | 135 |
| Reading direction | reverse |
| Mean pairwise identity | 75.81 |
| Shannon entropy | 0.39537 |
| G+C content | 0.32648 |
| Mean single sequence MFE | -22.90 |
| Consensus MFE | -13.01 |
| Energy contribution | -11.45 |
| Covariance contribution | -1.56 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20609365 135 - 23011544 UCAGAAAAUAGUUAGUCCCAAGUGAGUCGCAGUUUAAUUUAUAAGAUUUCUCUUAUAGCUGCCCACAUCCUACUUAUUUAUUUAGUAUCUGUUUUACGUAAUUAUUUAUUUGGGCAAACUCUGCUGACUCUCCAA ((((...(.((((.(.(((((((((((.(((((......(((((((....))))))))))))......................(((.......)))......)))))))))))).)))).).))))........ ( -28.70, z-score = -2.58, R) >droAna3.scaffold_12916 7106109 119 - 16180835 UAAGCUAAUAAACAUUCCUAAUCAAG-----GUUUUAUUUG-------UCCCUU----UUGUUUGGAUAUUACUUAUUUAUUUAGUAUCCAUUUUGUGUGUUUGCUUGUUUCGGUGAGCUCUUGUGAUUCCCUAA (((((.((((.(((.........(((-----(..(.....)-------..))))----.....(((((((((..........)))))))))...))).)))).)))))....((.(((.((....)))))))... ( -20.80, z-score = -1.64, R) >droSec1.super_18 489847 133 - 1342155 -UUAGAAAUAGUUAGUCCCAAAUGAAUC-CAGUUUCAUUUAUAAGAUUUCUCUUCUAGCUGCCCACAUCCUACUUAUUUAUUUAGUAUCUGUUUUACGUAAUUAUUUAUUUGGGCAAACUCUGCUGACUCUCCAA -........(((((((...(((((((..-....)))))))...................((((((...................(((.......)))((((....)))).))))))......)))))))...... ( -20.50, z-score = -0.94, R) >droSim1.chr2L 20172759 133 - 22036055 -CCAGAAAUAGUUAGUCCCAAAUGAAUC-CAGUUUCAUUUAUAAGAUUUCUCUUCUAGCUGCCCACAUCCUACUUAUUUAUUUAGUAUCUGUUUUACGUAAUUAUUUAUUUGGGCAAACUCUGCUGACUCUCCAA -.((((...((((((....(((((((..-....)))))))..((((....))))))))))(((((...................(((.......)))((((....)))).)))))....))))............ ( -21.60, z-score = -1.35, R) >consensus _CAAGAAAUAGUUAGUCCCAAAUGAAUC_CAGUUUCAUUUAUAAGAUUUCUCUUCUAGCUGCCCACAUCCUACUUAUUUAUUUAGUAUCUGUUUUACGUAAUUAUUUAUUUGGGCAAACUCUGCUGACUCUCCAA .........((((((((((((((((((...........................................((((.........))))..(((...))).....)))))))))))........)))))))...... (-13.01 = -11.45 + -1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:53 2011