| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,608,556 – 20,608,618 |
| Length | 62 |
| Max. P | 0.598131 |
| Location | 20,608,556 – 20,608,618 |
|---|---|
| Length | 62 |
| Sequences | 9 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 71.19 |
| Shannon entropy | 0.57378 |
| G+C content | 0.39132 |
| Mean single sequence MFE | -10.81 |
| Consensus MFE | -5.07 |
| Energy contribution | -5.43 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20608556 62 - 23011544 ---GCUUCAAAUGGCUUUAAAAGGCCAUCAACUCUAGAAUUUUCCUCAUGAACUCUAGAAUUUCC ---.......(((((((....)))))))....((((((.(((.......))).))))))...... ( -13.30, z-score = -2.60, R) >droGri2.scaffold_15126 6379798 62 - 8399593 GCGUGCUAAAAUGGCUUUAAAAGGCUAUCAAAU---GAAAGCCAAACGGAAAAUCUACUAUUGCC .((((((.....))).......((((.((....---)).))))..)))................. ( -11.20, z-score = -0.92, R) >droMoj3.scaffold_6500 24697770 62 - 32352404 GCAUGCUGAAAUGACUUUAAAAGGCCAUCAAAU---GAAAGCUAAACGGAAAAUCUGCAAUUGCC ((((((................(((..((....---))..)))....((.....)))))..))). ( -6.40, z-score = 1.03, R) >droVir3.scaffold_12963 6721436 62 + 20206255 GCGUGCUGAAAUGGCUUUAAAAGGCCAUCAAAU---GAAAGCUAAACGGAAAAUCUGCUAUUGCC .(((..(((..((((((....))))))))).))---)...((....(((.....))).....)). ( -11.10, z-score = -0.07, R) >droSim1.chr2L 20171965 62 - 22036055 ---GCUUCAAAUGGCUUUAAAAGGCCAUCAACUCUAGAAUUUUCCUCAUGAACUCUAGAAUUUCC ---.......(((((((....)))))))....((((((.(((.......))).))))))...... ( -13.30, z-score = -2.60, R) >droSec1.super_18 489083 52 - 1342155 -------------GCUUUAAAAGGCCAUCAACUCUAGAAUUUUCCUCAUGAACUCUAGAAUUUCC -------------((((....)))).......((((((.(((.......))).))))))...... ( -7.70, z-score = -1.32, R) >droYak2.chr2R 6956709 62 - 21139217 ---GCUUCAAAUGGCUUUAAAAGGCCAUCAACUCAAGAAUUUUCCUCAUGAACUCUAGAAUUUUC ---.......(((((((....)))))))....((.(((.(((.......))).))).))...... ( -8.80, z-score = -0.67, R) >droEre2.scaffold_4845 18743495 62 + 22589142 ---GCCUCAAAUGGCUUUAAAAGGCCAUCAACUCUAGAAUUUUCCCCAUGAACUCUAGCAUUUUC ---.......(((((((....))))))).....(((((.(((.......))).)))))....... ( -11.00, z-score = -1.60, R) >droAna3.scaffold_12916 7105159 54 - 16180835 ---GCUUCAAAUGGCUUUAAAAGGCCAUCAA------AAUGGUGCC--UCAGCUCGGGCAUUUUC ---.......(((((((....)))))))...------...((((((--(......)))))))... ( -14.50, z-score = -1.51, R) >consensus ___GCCUCAAAUGGCUUUAAAAGGCCAUCAACUC_AGAAUUUUCCUCAUGAACUCUAGAAUUUCC ..........(((((((....)))))))..................................... ( -5.07 = -5.43 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:52 2011