| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,909,846 – 1,909,964 |
| Length | 118 |
| Max. P | 0.636957 |
| Location | 1,909,846 – 1,909,964 |
|---|---|
| Length | 118 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.84 |
| Shannon entropy | 0.53317 |
| G+C content | 0.53207 |
| Mean single sequence MFE | -40.85 |
| Consensus MFE | -15.97 |
| Energy contribution | -17.06 |
| Covariance contribution | 1.10 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.636957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1909846 118 - 23011544 UCCAGCGGGGUUUCGAACCAGCGCGUAUCACUUAUACGCGAGCGACGGUCGGUGGAUGACUCCGCUGAGUGUAGCUUUGAGCAUUU--AGUUGAGCUCAGAAAAUGAGCCUUGAGUUGCA ..((((((((((....(((..(((((((.....)))))))...(.....))))....))))))))))..(((((((((.(((....--.))).)(((((.....)))))...)))))))) ( -43.20, z-score = -1.76, R) >droSim1.chr2L 1877742 118 - 22036055 CCCAGCGGGGUUUCGAACCAGCGCGAAUCACUUAUACGCGAGCGCCGGUCGGUGGAUGACUCCGCUUAGUGCAGCUUUGAGCAUUU--AGUUGUGCUCAGAAAAUGAGCCUUGAGUUGCG ...(((((((((((((.((.((((.................)))).)))))).....)))))))))....((((((((((((((..--....))))))).............))))))). ( -41.54, z-score = -0.94, R) >droSec1.super_14 1853389 118 - 2068291 UCCAGCGGGGUUUCGAACCAGCGCGAAUCACUUAUACGCGAGCGCCGGUCGGUGGAUGACUCCGCUGAGUGCAGCUUUGAGCAUUU--AGUUGUGCUCAGAAAAUGAGCCUUGAGUUGCG ..((((((((((((((.((.((((.................)))).)))))).....))))))))))...((((((((((((((..--....))))))).............))))))). ( -45.14, z-score = -1.69, R) >droYak2.chr2L 1889341 118 - 22324452 GCCAGCGGGGUUUCGAACCAGCGCAAAUCACUUAUACGCGAGCGCCGGUCGGUGGUUGACUCCGCUGAGUGCAGCUUUGAGCAUUU--AGUUGUGCUCAGAAAAUGCGCCUUGAGUUGCG ((((((((((((((((.((.((((...((.(......).)))))).)))))).....)))))))))).(((((..(((((((((..--....)))))))))...)))))........)). ( -48.60, z-score = -2.29, R) >droEre2.scaffold_4929 1953509 118 - 26641161 UCCAGCGGGGUUUCGAACCAGCGCGUAUCACUUAUACGCGAGCGCCGGUCGGUGGAUGACUUCGCUGAGUGUAGCUUUGAGCAUUU--AGUUGUGCUCAGAAAAUGCGCCUUGAGUUGCG ..((((((((((((.......(((((((.....)))))))..((((....)))))).)))))))))).(((((..(((((((((..--....)))))))))...)))))........... ( -45.50, z-score = -1.77, R) >droAna3.scaffold_12916 501372 108 + 16180835 GUUAGUCAAGCUCCCAACCAGCGCCAAUCACUUAUACGCGAGCGCCGAGCGGUAUAUGGCUCCACUAAGCUCAGCUCUGGGCAUUUAAAGCUCGGCUCACAAAUCAGA------------ ((.((((.((((((((....(((.............)))((((...((((......((....))....)))).)))))))).......)))).)))).))........------------ ( -28.23, z-score = -0.31, R) >dp4.chr4_group3 8657529 99 - 11692001 ---AGUGGAGACUCGAACCAGCGCGGUUCACUUAUACG----------UCGGUUGUGAGCUGUGCUAAGUGGAGCUUUGAGCAUUUAAAGCGGGAAUCAAAGCUUCCGGUUA-------- ---.(.(....).).((((((((((((((((....((.----------...)).))))))))))))..(.((((((((((((.......)).....))))))))))))))).-------- ( -37.80, z-score = -2.95, R) >droPer1.super_1 10110522 99 - 10282868 ---AGUGGAGACUCGAACCAGCGCGGUUCACUUAUACG----------UCGGUUGUGGGCUGUGCUAAGUGGAGCUUUGAGCAUUUAAAGCGGGAAUCAAAGCUUCCGGUUA-------- ---.(.(....).).((((((((((((((((....((.----------...)).))))))))))))..(.((((((((((((.......)).....))))))))))))))).-------- ( -36.80, z-score = -2.51, R) >consensus UCCAGCGGGGUUUCGAACCAGCGCGAAUCACUUAUACGCGAGCGCCGGUCGGUGGAUGACUCCGCUGAGUGCAGCUUUGAGCAUUU__AGUUGUGCUCAGAAAAUGCGCCUUGAGUUGCG ..(((((.((((....(((..((((...........))))..........)))....)))).)))))..((((..(((((((............)))))))...))))............ (-15.97 = -17.06 + 1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:39 2011