| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,587,592 – 20,587,688 |
| Length | 96 |
| Max. P | 0.602186 |
| Location | 20,587,592 – 20,587,688 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 72.82 |
| Shannon entropy | 0.43857 |
| G+C content | 0.54018 |
| Mean single sequence MFE | -26.06 |
| Consensus MFE | -15.05 |
| Energy contribution | -16.17 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20587592 96 - 23011544 CUAAUAAUGCGCCCGUUGCUGUCAAGUGCUGGCCUAGGACAAAGGCGGGUAAAGGAGAGUAUGGGAAUGGUAGUGGAAGUGGAAGUGGGAAUGUCC (((....(((.(((((.(((.((...((((.((((.......)))).))))...)).))))))))....))).)))....(((.((....)).))) ( -27.70, z-score = -1.91, R) >droSec1.super_18 463358 74 - 1342155 CUAAUAAUGCGCCCGUUGCUGUCAAGUGCUGGCCUAGGACAAAGGCGGGUAUGGGA----AUGGGAAUGGGAAUGGCC------------------ ........((.((((((.(((((..(((((.((((.......)))).)))))..).----)))).))))))....)).------------------ ( -26.50, z-score = -2.11, R) >droSim1.chr2L 20151131 84 - 22036055 CUAAUAAUGCGCCCGUUGCUGUCAAGUGCUGGCCUAGGACAAAGGCGGGUAAGGGAGGGUAUGGGAAUGGGAAUGGGAAUGGCC------------ (((........(((((.(((.((...((((.((((.......)))).))))...)).))))))))........)))........------------ ( -25.29, z-score = -1.00, R) >droYak2.chr2R 6936028 95 - 21139217 CUUAUAAUGCGCCAAUUGCUGUCAAGUGCUGGCCUAGGACACAGGCGGAGGGUAUAGGA-ACGGGAUAGGGAAUGGGCAUGGGAAUGGGAAUGUCU (((((.((((.(((.((.(((((..((.((.((((..............))))...)).-))..))))).)).)))))))....)))))....... ( -24.74, z-score = -0.43, R) >consensus CUAAUAAUGCGCCCGUUGCUGUCAAGUGCUGGCCUAGGACAAAGGCGGGUAAGGGAGGG_AUGGGAAUGGGAAUGGGAAUGG_A____________ ...........((((((.((((....((((.((((.......)))).)))).........)))).))))))......................... (-15.05 = -16.17 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:48 2011