| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,546,499 – 20,546,589 |
| Length | 90 |
| Max. P | 0.820313 |
| Location | 20,546,499 – 20,546,589 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 68.87 |
| Shannon entropy | 0.58239 |
| G+C content | 0.55921 |
| Mean single sequence MFE | -31.38 |
| Consensus MFE | -16.06 |
| Energy contribution | -16.40 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20546499 90 - 23011544 -----------CGCCCCCUCGUGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCCAUGCUGACAGCAGUCGCGGCGUUGUGGGAAAGCGGAGCAG- -----------(((.(((.((..(.(((((((((.((((.....)))).....(((.(((...))).)))))))))))).)..)).)))...)))......- ( -34.30, z-score = -0.57, R) >droSim1.chr2L 20117303 90 - 22036055 ------------GCCCCCUCGUGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCCAUGCUGACAGCAGUCGCGGAGUUGUGGGAAAGCGUGAAAGG ------------((((......))))...(((...(.((((((((((((((..(((.(((...))).)))..)))))).)))))))).)..)))........ ( -30.60, z-score = -0.58, R) >droSec1.super_18 428882 90 - 1342155 ------------CGCCCCUCGUGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCCAUGCUGACAGCAGUCGCGGAGUUGUGGGAAAGCGUGAAAGG ------------(((((.....)))))..(((...(.((((((((((((((..(((.(((...))).)))..)))))).)))))))).)..)))........ ( -31.70, z-score = -0.96, R) >droYak2.chr2R 6902546 84 - 21139217 ------------GCCCCUUCGCGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCCAUGCUGACAGCAGUCGAGGAAUUGUGGGUAGCCGG------ ------------((((......)))).(((((((...((((((((.(((((..(((.(((...))).)))..)))))..)))))))).))))))).------ ( -32.80, z-score = -1.61, R) >droEre2.scaffold_4845 18691089 89 + 22589142 ------------GCCCCUUCGUGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCUAUGCUGACAGCAGUCGCGGAGUUGUGGGUAGCCGGAAAAG- ------------((((......)))).(((((((.(..(...(((((((((..(((.(((...))).)))..)))))))))..)..).)))))))......- ( -36.10, z-score = -2.59, R) >droAna3.scaffold_12916 7050140 89 - 16180835 GAUUUUUCCCACCGAUGUGUGUGGGCGUGGCUGCGUGGAUAAUUUGCGAUUUAUGUGAGCUAUGUUGACAGCA--CAAGAAGGGGCGGCCG----------- ......((((..(..(((((((.(((((((((((((((((........)))))))).))))))))).))).))--)).)..))))......----------- ( -30.70, z-score = -1.53, R) >droMoj3.scaffold_6500 24625720 80 - 32352404 ---GGGCGUUGUUGC--UGCGUAGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGAGCGCAACGUUGACAGCAG-CAGUGGGGCAG---------------- ---..((.(..((((--(((((..((((...(((((.(((((........))))).)))))))))..)).))))-)))..).))..---------------- ( -33.80, z-score = -2.52, R) >droGri2.scaffold_15126 6312747 72 - 8399593 ----------GUCGC--UGCGUAGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGAGCACAGCGUUGACAACAG-CGAGAAGGCA----------------- ----------.((((--((.((..((((...(((...(((((........))))).)))..))))..))..)))-))).......----------------- ( -21.00, z-score = 0.78, R) >consensus ____________GCCCCUUCGUGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCCAUGCUGACAGCAGUCGCGGAGUUGUGGGAA__CG_______ ....................((.((((((((((((((.((........)).))))).))))))))).))................................. (-16.06 = -16.40 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:46 2011