| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,534,505 – 20,534,623 |
| Length | 118 |
| Max. P | 0.747893 |
| Location | 20,534,505 – 20,534,623 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 66.55 |
| Shannon entropy | 0.63604 |
| G+C content | 0.40490 |
| Mean single sequence MFE | -22.23 |
| Consensus MFE | -13.26 |
| Energy contribution | -12.52 |
| Covariance contribution | -0.74 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.49 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20534505 118 + 23011544 ACAGGCUAGCAAAUGGAAUCGCAAUCAGUCGCUCUCAUAGAGUAAAUAUGCGAAAUCAUUUGUGACUUUCGACUUUCGGCAUUCCUAGAACUGUACACUCCCUAACAC-ACAAUAUGAU ((((.(((((((((((..(((((.....(..(((.....)))..)...)))))..)))))))......(((.....))).....))))..))))..............-.......... ( -22.50, z-score = -0.40, R) >droAna3.scaffold_12916 7035628 105 + 16180835 -------AUAGAAUGGUUACUAGAAGUGCUAUUUUUGUAAAGGA-GUUUACUUUAUUAUUAAAGGGUUUCUUUU----AAAGAGCUUG--CUUUACGCUAUUUAUCCUAUAAAUAUGAU -------...(((((((.....((((((((.......(((((((-(....(((((....)))))...)))))))----)...)))..)--))))..)))))))................ ( -17.50, z-score = 0.28, R) >droEre2.scaffold_4845 18679465 102 - 22589142 ---------CAGAUGGAAUCGCAAUCAUGCGCUCUUAAGGAGCAUGCAUGCGGCAUCGUUUGUGAUGUCAG--------CAUUCCUGGAACUUUACACUCCCCAGCUCCACAUUAUGCC ---------.....(((((.((...(((((((((.....))))..))))).(((((((....))))))).)--------))))))((((.((...........)).))))......... ( -28.60, z-score = -0.69, R) >droYak2.chr2R 6890379 111 + 21139217 ACAGGCUAACAAAUGGAAUCGCAAUCAGGCGCUCUCAUAGGGUAUACAUGCGAAAUCAUUUGUGAUUUUUG--------CAUUCCUAGAACUUUACACUCCCUAUCACCACAUCAUAUU ..(((........((..(.(((......))).)..))(((((.....(((((((((((....))).)))))--------)))))))).............)))................ ( -18.00, z-score = -0.11, R) >droSec1.super_18 416903 117 + 1342155 ACAGGCUAACAAAUGGAAUCGCAAUCAGGCGCUCUCAUAGAGUACACAUGCGAAAUCAUUUGUGACUUUCGACUUUCAGCAUUCCUAGG-CUGCACACUUCCUAACAC-ACAAUAUGAU ..(((...((((((((..(((((.....(..(((.....)))..)...)))))..)))))))).............((((........)-))).......))).....-.......... ( -24.10, z-score = -1.07, R) >droSim1.chr2L 20104886 118 + 22036055 ACAGGCCAACAAAUGGAAUCGCAAUCAGGCGCUCUCAUAGAGUACACAUGCGAAAUCAUUUGUGACUUUCGACUUUCAGCAUUCCUAGAACUGCACACUCCCUAACAC-ACAAUAUGAU ..(((...((((((((..(((((.....(..(((.....)))..)...)))))..))))))))...............((((((...))).)))......))).....-.......... ( -22.70, z-score = -0.93, R) >consensus ACAGGCUAACAAAUGGAAUCGCAAUCAGGCGCUCUCAUAGAGUACACAUGCGAAAUCAUUUGUGACUUUCGACU____GCAUUCCUAGAACUGUACACUCCCUAACAC_ACAAUAUGAU ........((((((((..(((((.......((((.....)))).....)))))..))))))))........................................................ (-13.26 = -12.52 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:40 2011