| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,525,691 – 20,525,786 |
| Length | 95 |
| Max. P | 0.647565 |
| Location | 20,525,691 – 20,525,786 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 79.23 |
| Shannon entropy | 0.35248 |
| G+C content | 0.56365 |
| Mean single sequence MFE | -33.07 |
| Consensus MFE | -19.19 |
| Energy contribution | -19.94 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20525691 95 + 23011544 ----UCUUGGGCGGCGGCAACUAUUGCCAACGCAGGACGAGAAGUCCUGGAGUCCUGAAGUCCUGACACUGGCAGCGGCUCGUUUUGCAUACCAAGCGA ----.(((((...((((((.....))))(((.((((((.....))))))((((((((.(((......)))..))).))))))))..))...)))))... ( -37.40, z-score = -1.70, R) >droSim1.chr2L 20096058 95 + 22036055 ----UCUUGGGCGGCGGCAACUAUUGCCAACGCAGGACGAGAAGUCCUGGAGUCCUGAAGUCCUGACACUGGCAGCGCCUCGUUUUGCAUACCAAGCGA ----.(((((...((((((.....))))(((.((((((.....))))))(((.((((.(((......)))..))).).))))))..))...)))))... ( -33.00, z-score = -0.55, R) >droYak2.chr2R 6881580 87 + 21139217 ----UCUUGGGCUGCGGCAACUAUUGCCAACGCAGGACGAGAA--------GUCCUGAAGUCCUGACACUGGCAGCGCCUCGUUUUGCAUACCAAGCGA ----.((((((((((((((.....))))....((((((.....--------))))))..............)))))((........))...)))))... ( -32.00, z-score = -1.73, R) >droEre2.scaffold_4845 18671333 85 - 22589142 ----UCUUGGGCUGCGGCAACUAUUGCCAACGCAGGACGAG----------GUCCUGAAGUCCUGACACUGGCAGCGCCUCGUUUUGCAUACCAAGCGA ----.(((((.....((((.....))))...((((((((((----------((.(((.(((......)))..))).))))))))))))...)))))... ( -37.30, z-score = -3.29, R) >droVir3.scaffold_12963 6633442 83 - 20206255 UGCCUGGCUGCUGUAUGCAACUAUUACAAACGCAGGACGAG----------------AAGUCCUGACACUGUCGGCGCCUCGUUUUGCAUACCAAGCAG (((.(((.(((.....)))............((((((((((----------------..((.(((((...))))).))))))))))))...))).))). ( -28.70, z-score = -2.24, R) >droGri2.scaffold_15126 6292083 83 + 8399593 UGGCUGCUGGCUGGCUGCAACUAUUGUGAACGCAGGACGAG----------------AAGUCCUGACACUGCCAGCGCCUCAUUUUGCAUACCAAGCAG .(((.(((((((((......)))..(((....((((((...----------------..)))))).))).)))))))))......(((.......))). ( -30.00, z-score = -1.58, R) >consensus ____UCUUGGGCGGCGGCAACUAUUGCCAACGCAGGACGAG__________GUCCUGAAGUCCUGACACUGGCAGCGCCUCGUUUUGCAUACCAAGCGA .....(((((.....((((.....))))...((((((((((..................((.(((.......))).))))))))))))...)))))... (-19.19 = -19.94 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:39 2011