| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,516,585 – 20,516,688 |
| Length | 103 |
| Max. P | 0.588023 |
| Location | 20,516,585 – 20,516,688 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.36 |
| Shannon entropy | 0.45457 |
| G+C content | 0.46806 |
| Mean single sequence MFE | -30.21 |
| Consensus MFE | -20.18 |
| Energy contribution | -19.95 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588023 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20516585 103 + 23011544 -----------------AAGCAGCAUGCAAUGCGGCAUUGUGCUUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGGUGGCGUUCUCUUUCCACC -----------------......(((((......(((((((((.......))((((((((........)))))))))))))))......)))))......(((((.(......).))))) ( -28.40, z-score = -0.92, R) >droSim1.chr2L 20086880 103 + 22036055 -----------------AAGCAGCAUGCGAUGCGGCAUUGUGCCUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGGUGGCGUUCUCUGUCCACC -----------------......((((((.((((((.....)))...((((..(((((((........)))))))..)))))))....))))))......(((((((.....)).))))) ( -31.50, z-score = -1.20, R) >droSec1.super_18 394736 103 + 1342155 -----------------AAGCAGCAUGCGCUUCGGCAUUGUGCCUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGGUGGCGUUCUCUGUCCACC -----------------......((((((.....(((((((((.......))((((((((........))))))))))))))).....))))))......(((((((.....)).))))) ( -30.90, z-score = -1.39, R) >droYak2.chr2R 6871853 103 + 21139217 -----------------AAGCAGCAUGCGAUGCGGCGUUGUGCCUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGGUGGCGUUCUCUGUCCGCC -----------------......((((((.((((((.....)))...((((..(((((((........)))))))..)))))))....))))))......(((((((.....)).))))) ( -30.40, z-score = -0.23, R) >droEre2.scaffold_4845 18662874 102 - 22589142 -----------------AAGCAGCAUGCGAUGCGGCAUUGUGCCUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGGUGGCGU-CUCUGUGCACC -----------------.....(((((.((((((((.....)))(((((((..(((((((........)))))))..).((((......))))...))))))..))))-).).))))... ( -30.40, z-score = -0.46, R) >droAna3.scaffold_12916 7013293 103 + 16180835 -----------------UCUCUGGAUGCGAUGCGGCAUUGCGCCUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGCUGGCGUUCACCCCUCGUU -----------------.........((((.(.((....(((((.((((((..(((((((........)))))))..).((((......))))...)))))..)))))...))).)))). ( -28.40, z-score = -0.57, R) >dp4.chr4_group3 3878918 110 - 11692001 GCGCCGG-CUCUCUGGCUCUGUGGAUGCGAUGCGGCAUUGCGCCUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGCUGGCGUUCC--------- (((((((-(......((.((((....((((((.(((.....))).).)))))((((((((........)))))))))))).))......(.((....)))))))))))...--------- ( -38.60, z-score = -1.65, R) >droPer1.super_1 1023928 111 - 10282868 GCGCGGGACGCUCUGGCUCUGUGGAUGCGAUGCGGCAUUGCGCCUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGCUGGCGUUCC--------- ....((((((((..(((((....))..(.(((((..(((((((......((..(((((((........)))))))..)))))))))..))))).).....)))))))))))--------- ( -37.00, z-score = -0.80, R) >droWil1.scaffold_180708 10654255 88 - 12563649 ------------------------GUGCGAUGCGGCAGUUCGCCUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGUUGGCGUUGGU-------- ------------------------..((((((.(((.....))).).)))))((((((((........)))))))).((((((....(((.((....)))))..))))))..-------- ( -24.70, z-score = -0.29, R) >droVir3.scaffold_12963 6624172 96 - 20206255 ------------------------GUGCGGUGCGGAAUUGCGCCUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGUUGCAGGUUGUGGCGUAAC ------------------------...(.(((((.((((((((......((..(((((((........)))))))..)))))))))).))))).)....(((..(.....)..))).... ( -30.00, z-score = -1.24, R) >droMoj3.scaffold_6500 24590218 96 + 32352404 ------------------------GUGCGGUGUGCAAUUGCGCCUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGUCGCAGGUUGUGGCAUAAA ------------------------.((((.((((((((((.....)))))))((((((((........))))))))))).))))................(((((.....)))))..... ( -28.00, z-score = -0.58, R) >droGri2.scaffold_15126 6283485 80 + 8399593 ------------------------GCUCAGUGCGGAAUUGCGCUUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGUCG---------------- ------------------------..((.(((((.(((((((((..((((((((((.........))))).)))))..))))))))).))))).))........---------------- ( -24.20, z-score = -2.13, R) >consensus _________________AAGCAGCAUGCGAUGCGGCAUUGCGCCUCGAUUGCGAUUGACACAAUAAAUUGUCAAUUACAGUGCAAUUACGUAUGGAAAUCGGUGGCGUUCUCUGU_CACC ...........................(.(((((..(((((((......((..(((((((........)))))))..)))))))))..))))).)......................... (-20.18 = -19.95 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:38 2011