| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,512,598 – 20,512,692 |
| Length | 94 |
| Max. P | 0.755424 |
| Location | 20,512,598 – 20,512,692 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 79.58 |
| Shannon entropy | 0.39393 |
| G+C content | 0.58616 |
| Mean single sequence MFE | -29.50 |
| Consensus MFE | -18.57 |
| Energy contribution | -20.08 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20512598 94 - 23011544 CAGGUGACCUGCGCUGAGUAGCGCCAGACGCUGGUUAGGUAAAUUAUACCUAAUGCCAGGCCCAUGCCCACCUGUC-CGUCUGCACCGCCCACCC ..((((....(((((....)))))((((((.((((((((((.....))))))..))))(((....)))........-))))))))))........ ( -33.20, z-score = -2.23, R) >droSim1.chr2L 20082810 94 - 22036055 UAGGUGACCUGCGCUGAGUAGCGCCAGACGCUGGUUAGGUAAAUUAUACCUAAUGCCAGGCCCACGCCCACCUGUC-CGCCUGCUCCGCCCACCC ..((((....(((..((((((.((..(((..((((((((((.....))))))..))))(((....))).....)))-.))))))))))).)))). ( -33.20, z-score = -2.30, R) >droSec1.super_18 390607 94 - 1342155 UAGGUGACCUGCGCUGAGUAGCGCCAGACGCUGGUUAGGUAAAUUAUACCUAAUGCCAGGCCCACGCCCACCUGUC-CGCCUGCUCCGCCCACCC ..((((....(((..((((((.((..(((..((((((((((.....))))))..))))(((....))).....)))-.))))))))))).)))). ( -33.20, z-score = -2.30, R) >droYak2.chr2R 6868074 94 - 21139217 GAGGUUACCUGCGUUGAGAAGCGGCAGACGCUGGUUAGGUAAAUUAUACUUAAUGCUAGACUCACGCCCACCUGUC-CGCCUGCUCCGAAAACCC .((((.....((((.(((.((((.....)))).((((((((.....))))))))......)))))))..))))...-.................. ( -21.90, z-score = 0.33, R) >droEre2.scaffold_4845 18658923 94 + 22589142 CAGGUGACCUGCGCCGAGAGGCGGCAGAGGCUGGUUAGGUAAAUUAUACGUAAUGCCAGACCCACGCCCACCUGGC-CGCCCGCCCCGAAAACCC ((((((..(((((((....))).)))).(((.((((.((((............)))).))))...)))))))))..-.................. ( -33.90, z-score = -1.64, R) >droAna3.scaffold_12916 7009699 79 - 16180835 ---------------GAGUGGC-CCAGACUUUGGUUAGGUAAAUUAUAUUUAAUGCCAGAACCAGGCCCUCUCGGCUCAACCGCCUCGUUCACCU ---------------(((.(((-(.....((((((((((((.....))))))..))))))....)))))))..(((......))).......... ( -21.60, z-score = -1.38, R) >consensus CAGGUGACCUGCGCUGAGUAGCGCCAGACGCUGGUUAGGUAAAUUAUACCUAAUGCCAGACCCACGCCCACCUGUC_CGCCUGCUCCGCCCACCC ((((((..(((((((....)))).)))...(((((((((((.....))))))..))))).........))))))..................... (-18.57 = -20.08 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:36 2011