Locus 2614

Sequence ID dm3.chr2L
Location 20,506,926 – 20,507,041
Length 115
Max. P 0.810672
window3591

overview

Window 1

Location 20,506,926 – 20,507,041
Length 115
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 92.72
Shannon entropy 0.10032
G+C content 0.33984
Mean single sequence MFE -24.97
Consensus MFE -21.59
Energy contribution -20.60
Covariance contribution -0.99
Combinations/Pair 1.17
Mean z-score -1.97
Structure conservation index 0.86
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.76
SVM RNA-class probability 0.810672
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 20506926 115 + 23011544
AUGGGACGCAGAACAAAAGCAAUAGACAAAAUGAAACACUUUUACGUUUUAAUGGUCUAGAGAUAU----GUUUAUGCAAAACAUAAGCGGAAAUUGCCGGGAGUAACAUUUUUUUUAA
(((..((((((((((....(..(((((....((((((........))))))...)))))..)...)----)))).)))..........(((......)))...))..)))......... ( -21.90, z-score =  -1.43, R)
>droSec1.super_18 385034 119 + 1342155
AUGGAACGCAGAACAAAAGCAAUAGACCGAAUGAAACACUUUUACGUUUUAAUGGUCUAGAGAUAUGUAUGUUUAUGCAAAACAUAAGCGGAAACUGCCACGAGUAACAAUUUUGUUAA
.......((((.(((....(..(((((((..((((((........)))))).)))))))..)...))).((((((((.....))))))))....))))......(((((....))))). ( -26.10, z-score =  -2.16, R)
>droSim1.chr2L 20077201 119 + 22036055
AUGGAACGCAGAACAAAAGCAAUAGACCAAAUGAAACACUUUUACGUUUUAAUGGUCUAGAGAUAUGUAUGUUUAUGCAAAACAUGAGCGGAAACUGCCACGAGUAACAAUUUUGUUAA
.......((((.(((....(..(((((((..((((((........)))))).)))))))..)...))).((((((((.....))))))))....))))......(((((....))))). ( -26.90, z-score =  -2.30, R)
>consensus
AUGGAACGCAGAACAAAAGCAAUAGACCAAAUGAAACACUUUUACGUUUUAAUGGUCUAGAGAUAUGUAUGUUUAUGCAAAACAUAAGCGGAAACUGCCACGAGUAACAAUUUUGUUAA
.......((((...........(((((((..((((((........)))))).)))))))...........(((((((.....))))))).....)))).(((((.......)))))... (-21.59 = -20.60 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:34 2011