| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,504,529 – 20,504,641 |
| Length | 112 |
| Max. P | 0.787456 |
| Location | 20,504,529 – 20,504,641 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 86.27 |
| Shannon entropy | 0.24601 |
| G+C content | 0.54536 |
| Mean single sequence MFE | -38.14 |
| Consensus MFE | -22.42 |
| Energy contribution | -24.82 |
| Covariance contribution | 2.40 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.787456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20504529 112 - 23011544 ACACUUGGCCUGCUGAUCCAACUGCUCCUGCUGCAGUGGCCAUCUCGCUCCACGACGUCCAUGCUGCCUCAGCAGAAAAACGGCGAGAGCU----GCCGAAAUUGCAAAUAAAAUU ....((((((((((((....(((((.......)))))((((((..((........))...)))..))))))))))......(((....)))----)))))................ ( -32.10, z-score = -1.00, R) >droSim1.chr2L 20074826 116 - 22036055 ACACUUGGCCUGCUGAUCCAACUGCUCCUGCUGCAAUGGCCAUCUCGCUCCUCGACGUCCCUGCUGCCUCAGCAGAAAAACGGCGAGAGCUGCAGGCCGAAAUUGCAAAUAAAAUU ....(((((((((.((((((..(((.......))).)))..)))..((((.(((.(((..((((((...))))))....))).))))))).)))))))))................ ( -41.10, z-score = -3.24, R) >droSec1.super_18 382605 114 - 1342155 ACACUUGGCCUGCUGAUCCAACUGCUCCUGCUGCAGUGGCCAUCUCGCUCCACGACGUCCCUGCUGCCUCAGCAGAAAAACGGCGAGAGAC--AGGCCGAAAUUGCAAAUAAAAUU ....(((((((((....(((.((((.......)))))))...(((((((....(....).((((((...))))))......)))))))).)--)))))))................ ( -37.50, z-score = -2.36, R) >droYak2.chr2R 6860059 116 - 21139217 ACACUUGGCCUGCUGAUCCAGCUGCUCCUGCUGCAGAGGCCAUUUCGCUCCUCGACGUCCCCGCUGCCUCAGCAGAAAAACGCCGAGAGCUGCAAGCCGAAAUUGCAAAUAAAAUU .....((((((.(((...((((.......)))))))))))))....((((.(((.(((.....((((....))))....))).)))))))(((((.......)))))......... ( -39.10, z-score = -2.51, R) >droEre2.scaffold_4845 18651351 105 + 22589142 ACACUUGGCCUGCCGAUCCAGCUGCU---GUUCCAACUGCUGAGC-------CAACGUCCCUGCUGCCUCAGCAGAAAAGCGCCG-GAGCUGCAGGCCGAAAUUGCAAAUAAAAUU ....(((((((((.(.(((.((.(((---.......((((((((.-------((.((....)).)).))))))))...))))).)-)).).)))))))))................ ( -40.90, z-score = -3.46, R) >consensus ACACUUGGCCUGCUGAUCCAACUGCUCCUGCUGCAGUGGCCAUCUCGCUCCACGACGUCCCUGCUGCCUCAGCAGAAAAACGGCGAGAGCUGCAGGCCGAAAUUGCAAAUAAAAUU ....(((((((((...((..(((((.......)))))...............((.(((..((((((...))))))....))).)).))...)))))))))................ (-22.42 = -24.82 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:34 2011