| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,499,748 – 20,499,840 |
| Length | 92 |
| Max. P | 0.600219 |
| Location | 20,499,748 – 20,499,840 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 58.69 |
| Shannon entropy | 0.67360 |
| G+C content | 0.30326 |
| Mean single sequence MFE | -19.40 |
| Consensus MFE | -4.30 |
| Energy contribution | -5.42 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.53 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20499748 92 - 23011544 GAAAACCACUAAUAUCUUUUGAAAUAGUGUUAUUUAAAAUACUGCGAAAGCAGGUGGUUU----AGGCAACUCUAUUAAAGUUGAUGUUAUAAAAA--------------- .........(((((((..((..(((((.(((.((((((...((((....))))....)))----))).))).)))))..))..)))))))......--------------- ( -24.40, z-score = -4.18, R) >droSim1.chr2L 20070255 88 - 22036055 GAAAACCACUAAUACCAUUUGAAAUAGUGUUACUUAAAACACUGCGGAAGCAGGUGGUUU--------AACUCCAUUAAAGUGGACGUUAUAAAAA--------------- ..((((((((...............((((((......))))))((....)).))))))))--------((((((((....))))).))).......--------------- ( -25.80, z-score = -4.33, R) >droSec1.super_18 377836 88 - 1342155 GAAAACCACUAAUACCAUUUGAAAUAGUGUUACUUAAAACACUUCGGAAGCAGGUGGUUU--------AACUCUAUUAAGGUGGACAUUUUAAAAA--------------- .....(((((...((((((((....((((((......)))))).......))))))))((--------((.....)))))))))............--------------- ( -18.90, z-score = -2.02, R) >droYak2.chr2R 6855379 82 - 21139217 -----------AAACCAUUUACAAUAUGGUAAUAUAAAAUAAAGCGGAAUUAAGUGGUUU---UAGGUGACUCUAUUAAAGUGGACAUUAUAAGUA--------------- -----------...((((((..((((.(((....((((((...((........)).))))---))....))).)))).))))))............--------------- ( -13.20, z-score = -0.89, R) >droAna3.scaffold_12916 6996832 111 - 16180835 AGAAACAAUUAUUAAAUUCAUAAAUAUUGGAAAAUAAGUAAGUGCCAUUGCGGUUAAGUGAAAAAUGAGAGUCAAUUAAUGUGUUUAGUGCCUGGAUAUCAGCCAGUAAAG ..(((((..((((((.(((((...((((....))))..(((.(((....))).))).)))))...((.....)).))))))))))).....((((.......))))..... ( -14.70, z-score = 0.47, R) >consensus GAAAACCACUAAUACCAUUUGAAAUAGUGUUACUUAAAACACUGCGGAAGCAGGUGGUUU____A_G_AACUCUAUUAAAGUGGACAUUAUAAAAA_______________ .............((((((((...(((((((......)))))))......))))))))..................................................... ( -4.30 = -5.42 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:31 2011